chr4 : 13,529,217 13,529,960
743 bp 82 TFs 1 linked gene
This 743 bp open chromatin element is linked to LINC01097 and is bound by 82 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01097 1.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:13,524,217 – 13,534,960
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 141 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 284 bp overlap
ATF3 1 dataset
ChIP K562 ENCFF921JQW 112 bp overlap
BCL11A 1 dataset
ChIP MCF-10A ERP003925.BCL11A.MCF-10A 143 bp overlap
BCOR 4 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 374 bp overlap
ChIP K-562 ENCSR808AKZ.BCOR.K-562 218 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 186 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 225 bp overlap
BHLHE41 1 dataset
Motif DE_12h DE_12h-BHLHE41_MA0636.1 10 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 517 bp overlap
BRD2 2 datasets
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 416 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 238 bp overlap
BRD4 4 datasets
ChIP CLL_patient1_4h_CpG_BET GSE109411.BRD4.CLL_patient1_4h_CpG_BET 500 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 271 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 261 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 56 bp overlap
CBX1 1 dataset
ChIP K-562 ENCSR948QLZ.CBX1.K-562 242 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 287 bp overlap
ChIP H1 ENCFF095JHA 507 bp overlap
CEBPA 1 dataset
ChIP MV4-11 GSE88746.CEBPA.MV4-11 115 bp overlap
CEBPB 1 dataset
ChIP MV4-11 GSE88746.CEBPB.MV4-11 58 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 183 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 239 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 93 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 213 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 115 bp overlap
ESR1 2 datasets
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 210 bp overlap
ChIP MCF-7_estradiol_45min_ChIP-and-reChIP GSE99626.ESR1.MCF-7_estradiol_45min_ChIP-and-reChIP 264 bp overlap
ETS1 3 datasets
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 150 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 232 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 150 bp overlap
EZH2 36 datasets
ChIP B cell ENCFF803EMO 314 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 208 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 394 bp overlap
ChIP GM23248 ENCFF404ZHM 395 bp overlap
ChIP GM23248 ENCFF404ZHM 191 bp overlap
ChIP GM23338 ENCFF613YON 743 bp overlap
ChIP GM23338 ENCFF886DXX 148 bp overlap
ChIP H1 ENCFF232NZA 743 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 743 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 368 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 346 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 551 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 151 bp overlap
ChIP astrocyte ENCFF365JTP 641 bp overlap
ChIP astrocyte ENCFF365JTP 641 bp overlap
ChIP astrocyte ENCFF365JTP 90 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 743 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 621 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 675 bp overlap
ChIP fibroblast of lung ENCFF479BAW 533 bp overlap
ChIP fibroblast of lung ENCFF479BAW 395 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 98 bp overlap
ChIP hepatocyte ENCFF552DZB 404 bp overlap
ChIP hepatocyte ENCFF552DZB 490 bp overlap
ChIP keratinocyte ENCFF070STK 173 bp overlap
ChIP keratinocyte ENCFF070STK 526 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 291 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 268 bp overlap
ChIP myotube ENCFF857GWB 471 bp overlap
ChIP myotube ENCFF857GWB 304 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 703 bp overlap
ChIP neural cell ENCFF610EPB 62 bp overlap
ChIP neural progenitor cell ENCFF018MKA 743 bp overlap
ChIP neural progenitor cell ENCFF472NFV 743 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 347 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 421 bp overlap
GATA6 4 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 321 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 245 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 331 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 161 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 98 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 119 bp overlap
JARID2 1 dataset
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 743 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 63 bp overlap
JUN 2 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 221 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 231 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 220 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 288 bp overlap
MITF 1 dataset
Motif DE_12h DE_12h-MITF_MA0620.4 10 bp overlap
MYCN 1 dataset
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 307 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 696 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 196 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 221 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
Nkx2-1 1 dataset
Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 280 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 238 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 256 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 286 bp overlap
PCGF2 1 dataset
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 304 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 155 bp overlap
POLR2A 1 dataset
ChIP HL-60 ENCFF321XKE 113 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 704 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 189 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 714 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 82 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 262 bp overlap
ChIP K562 ENCFF248CGR 278 bp overlap
ChIP K562 ENCFF957ORK 278 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 204 bp overlap
RNF2 1 dataset
ChIP H1 ENCFF239FFS 607 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE85524.RUNX1.Jurkat 189 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 67 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 182 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 445 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0828.3 10 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 666 bp overlap
SUZ12 7 datasets
ChIP GM12878 ENCFF498QAM 112 bp overlap
ChIP GM12878 ENCFF498QAM 371 bp overlap
ChIP H1 ENCFF507HGF 150 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 743 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 743 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 743 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 148 bp overlap
TFE3 1 dataset
Motif DE_12h DE_12h-TFE3_MA0831.3 10 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 196 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1575.2 17 bp overlap
USF1 1 dataset
Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap
USF2 1 dataset
Motif DE_12h DE_12h-USF2_MA0526.5 10 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 256 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 286 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 107 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 428 bp overlap
ChIP K562 ENCFF875HLX 233 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 182 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 172 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 51 bp overlap
ZMYM3 3 datasets
ChIP Hep-G2_Ab_JH39-2-2F10 GSE97661.ZMYM3.Hep-G2_Ab_JH39-2-2F10 167 bp overlap
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 274 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 226 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 134 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 102 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 62 bp overlap
ZNF354C 1 dataset
ChIP K562 ENCFF371JMA 285 bp overlap
ZNF468 1 dataset
ChIP HEK293T GSE78099.ZNF468.HEK293T 385 bp overlap
ZNF580 2 datasets
ChIP HEK293 ENCFF906MQV 130 bp overlap
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 129 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 719 bp overlap
ZNF768 1 dataset
ChIP HepG2 ENCFF388QCK 276 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 107 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 80 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 294 bp overlap