chr3 : 193,554,795 193,555,095
300 bp 112 TFs 0 linked genes
This 300 bp open chromatin element has no linked target genes and is bound by 112 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:193,549,795 – 193,560,095
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
112 transcription factors
Source
Cell type
AHR 2 datasets
ChIP MCF-7_DMSO_45min GSE90550.AHR.MCF-7_DMSO_45min 151 bp overlap
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 280 bp overlap
AR 6 datasets
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 153 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 101 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 78 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 66 bp overlap
ChIP breast_tumor_Male_20 GSE104399.AR.breast_tumor_Male_20 203 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 199 bp overlap
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 300 bp overlap
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 269 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BAF155 1 dataset
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 213 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 175 bp overlap
CHD8 1 dataset
ChIP T-47D_R5020_45 GSE62428.CHD8.T-47D_R5020_45 73 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 100 bp overlap
CTCF 3 datasets
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 132 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 139 bp overlap
DPF2 1 dataset
ChIP MCF-7 ENCSR234VCE.DPF2.MCF-7 133 bp overlap
EP300 1 dataset
ChIP upper lobe of left lung ENCFF024QBJ 232 bp overlap
ERF::NHLH1 2 datasets
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
ESR1 23 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 300 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 231 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 300 bp overlap
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 300 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 160 bp overlap
ChIP MCF-7_E2_talen GSE94493.ESR1.MCF-7_E2_talen 145 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 147 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 124 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 300 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 270 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 244 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 221 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 260 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 186 bp overlap
ChIP MCF-7_vehicle_4h GSE99626.ESR1.MCF-7_vehicle_4h 192 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 297 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 300 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 228 bp overlap
ChIP breast_tumor_Female_6 GSE104399.ESR1.breast_tumor_Female_6 294 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 230 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 300 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 288 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 292 bp overlap
ESRRA 4 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 300 bp overlap
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 300 bp overlap
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 56 bp overlap
ESRRB 1 dataset
Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap
Esrrg 1 dataset
Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap
FOXA1 15 datasets
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 206 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 56 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 213 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 278 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 141 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 137 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 254 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 126 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 214 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 222 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 257 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 284 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 278 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 300 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 261 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 244 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 281 bp overlap
HNF1A 1 dataset
ChIP HEE_1 GSE76376.HNF1A.HEE_1 184 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 268 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 170 bp overlap
HOXA4 1 dataset
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 300 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 202 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 132 bp overlap
Lhx3 1 dataset
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
MAX 1 dataset
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 188 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 300 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MYCN 2 datasets
ChIP 22Rv1_intact GSE117304.MYCN.22Rv1_intact 185 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 186 bp overlap
MYF5 1 dataset
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
MYF6 1 dataset
Motif DE_12h DE_12h-MYF6_MA0667.1 10 bp overlap
MYOD1 2 datasets
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 136 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NELFA 1 dataset
ChIP BT-474_INHHDAC ERP010664.NELFA.BT-474_INHHDAC 300 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 216 bp overlap
NKX6-1 1 dataset
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
NR1H2 1 dataset
ChIP HT29_GW3965_2H GSE77039.NR1H2.HT29_GW3965_2H 215 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F2 1 dataset
Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap
NR5A1 1 dataset
Motif DE_12h DE_12h-NR5A1_MA1540.3 12 bp overlap
NR6A1 1 dataset
Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 285 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 249 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr5A2 1 dataset
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 266 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 188 bp overlap
PGR 7 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 212 bp overlap
ChIP T-47D GSE31129.PGR.T-47D 138 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 213 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 138 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 112 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 126 bp overlap
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 278 bp overlap
POLR2A 23 datasets
ChIP Peyer's patch ENCFF767HVN 261 bp overlap
ChIP body of pancreas ENCFF501FEC 300 bp overlap
ChIP body of pancreas ENCFF675RCN 300 bp overlap
ChIP body of pancreas ENCFF727UBE 277 bp overlap
ChIP lower leg skin ENCFF058ULB 270 bp overlap
ChIP lower leg skin ENCFF687RJC 300 bp overlap
ChIP sigmoid colon ENCFF543ARF 210 bp overlap
ChIP stomach ENCFF607ZPU 250 bp overlap
ChIP stomach ENCFF719RDO 249 bp overlap
ChIP stomach ENCFF820WZN 190 bp overlap
ChIP thyroid gland ENCFF979LRR 300 bp overlap
ChIP transverse colon ENCFF098HBD 81 bp overlap
ChIP transverse colon ENCFF193UMS 300 bp overlap
ChIP transverse colon ENCFF290LPJ 282 bp overlap
ChIP transverse colon ENCFF607LKE 183 bp overlap
ChIP transverse colon ENCFF610RWV 209 bp overlap
ChIP transverse colon ENCFF840PXT 93 bp overlap
ChIP transverse colon ENCFF964EQU 181 bp overlap
ChIP upper lobe of left lung ENCFF095BJW 239 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 174 bp overlap
ChIP upper lobe of left lung ENCFF504HCM 300 bp overlap
ChIP upper lobe of left lung ENCFF603FIH 300 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 300 bp overlap
POU2F1 2 datasets
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 255 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 300 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
Ppara 1 dataset
Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
RAD21 3 datasets
ChIP HUVEC-C_normoxia GSE94872.RAD21.HUVEC-C_normoxia 107 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 138 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.RAD21.MCF-7_E2_SHCTCF 188 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 185 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0071.1 10 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 262 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 204 bp overlap
SMARCA4 3 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 184 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 300 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 283 bp overlap
SMARCB1 3 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 62 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 262 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 297 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 191 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 300 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 187 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
SS18 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 177 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 245 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 218 bp overlap
STAT3 7 datasets
ChIP BT-474 GSE152203.STAT3.BT-474 264 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 225 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 279 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 195 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 300 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 258 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 288 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TFAP4 1 dataset
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 221 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 280 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 300 bp overlap
Vdr 2 datasets
Motif DE_12h DE_12h-Vdr_MA0693.4 7 bp overlap
Motif DE_12h DE_12h-Vdr_MA0693.4 7 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 92 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF652 1 dataset
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 99 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap