chr3 : 61,796,100 61,796,633
533 bp 99 TFs 1 linked gene
This 533 bp open chromatin element is linked to PTPRG and is bound by 99 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PTPRG 234.7 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:61,791,100 – 61,801,633
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
99 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 499 bp overlap
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 205 bp overlap
BARX2 1 dataset
Motif DE_48h DE_48h-BARX2_MA1471.2 9 bp overlap
BRD4 2 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 339 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 154 bp overlap
CCAR2 1 dataset
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 156 bp overlap
CEBPB 1 dataset
ChIP MCF-7 ENCFF772ZTQ 238 bp overlap
CEBPG 1 dataset
ChIP MCF-7 ENCFF155HZI 225 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 168 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 175 bp overlap
CTBP2 1 dataset
ChIP MCF-7 GSE107013.CTBP2.MCF-7 256 bp overlap
CTCF 1 dataset
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 162 bp overlap
Crx 1 dataset
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
ELF1 1 dataset
ChIP MCF-7 ENCFF305BNP 157 bp overlap
ELL2 1 dataset
ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 251 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 273 bp overlap
EP300 1 dataset
ChIP MCF-7_DMSO GSE29073.EP300.MCF-7_DMSO 155 bp overlap
ESR1 42 datasets
ChIP MCF-7 GSE148277.ESR1.MCF-7 368 bp overlap
ChIP MCF-7 GSE117492.ESR1.MCF-7 345 bp overlap
ChIP MCF-7 GSE95302.ESR1.MCF-7 201 bp overlap
ChIP MCF-7 GSE68355.ESR1.MCF-7 385 bp overlap
ChIP MCF-7 GSE45822.ESR1.MCF-7 164 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 159 bp overlap
ChIP MCF-7_1-6-HD GSE117492.ESR1.MCF-7_1-6-HD 264 bp overlap
ChIP MCF-7_D538G GSE148277.ESR1.MCF-7_D538G 332 bp overlap
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 464 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 314 bp overlap
ChIP MCF-7_DMSO GSE148277.ESR1.MCF-7_DMSO 245 bp overlap
ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 182 bp overlap
ChIP MCF-7_E2+4OHT GSE119702.ESR1.MCF-7_E2+4OHT 305 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 459 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 510 bp overlap
ChIP MCF-7_GLYC ERP002305.ESR1.MCF-7_GLYC 141 bp overlap
ChIP MCF-7_IL1b-ICI GSE67295.ESR1.MCF-7_IL1b-ICI 171 bp overlap
ChIP MCF-7_IL1b-ICI GSE67295.ESR1.MCF-7_IL1b-ICI 137 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.ESR1.MCF-7_IL1b_45m 160 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.ESR1.MCF-7_IL1b_45m 146 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 153 bp overlap
ChIP MCF-7_OHT GSE119702.ESR1.MCF-7_OHT 305 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 209 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 459 bp overlap
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 231 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 385 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 286 bp overlap
ChIP MCF-7_estrogen GSE133941.ESR1.MCF-7_estrogen 180 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 467 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 213 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 344 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 398 bp overlap
ChIP MCF-7_shCtrl GSE125594.ESR1.MCF-7_shCtrl 196 bp overlap
ChIP MCF-7_shFbxo GSE119702.ESR1.MCF-7_shFbxo 275 bp overlap
ChIP MCF-7_shFbxo_E2 GSE119702.ESR1.MCF-7_shFbxo_E2 275 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 234 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT_SRC-3 238 bp overlap
ChIP MCF-7_shFbxo_E2_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_E2_SRC-3 198 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 234 bp overlap
ChIP MCF-7_shFbxo_OHT_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_OHT_SRC-3 238 bp overlap
ChIP MCF-7_shFbxo_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_SRC-3 198 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 347 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 168 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 156 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 265 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 149 bp overlap
FOXA1 2 datasets
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 103 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 220 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 393 bp overlap
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 230 bp overlap
ChIP DE DE-FOXA2-1 533 bp overlap
ChIP DE DE-FOXA2-2 455 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 176 bp overlap
GATA2 6 datasets
ChIP SH-SY5Y ENCFF485YIB 375 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 392 bp overlap
ChIP SK-N-SH ENCFF764OZD 398 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 288 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 283 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 276 bp overlap
GATA3 16 datasets
ChIP Kelly GSE65664.GATA3.Kelly 350 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 321 bp overlap
ChIP MCF-7 ENCFF352QVM 385 bp overlap
ChIP MCF-7 ENCFF437NQS 371 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 365 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 340 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 388 bp overlap
ChIP MCF-7 ENCSR000EWS.GATA3.MCF-7 364 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 284 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 286 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 340 bp overlap
ChIP MCF-7_ICI GSE81510.GATA3.MCF-7_ICI 222 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 178 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 293 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 375 bp overlap
ChIP SK-N-SH ENCFF040SSB 365 bp overlap
GATA4 8 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 250 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 322 bp overlap
ChIP DE DE-GATA4-1 533 bp overlap
ChIP DE DE-GATA4-2 533 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 494 bp overlap
ChIP foregut GSE117136.GATA4.foregut 521 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 533 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 525 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 462 bp overlap
ChIP DE DE-GATA6-2 533 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 474 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 533 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 533 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 522 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 533 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 533 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 528 bp overlap
ChIP foregut GSE117136.GATA6.foregut 522 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 398 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 453 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 453 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 432 bp overlap
GSC 1 dataset
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 289 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 131 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 376 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 193 bp overlap
HIC1 2 datasets
ChIP HEK293 ENCFF252CFL 233 bp overlap
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 182 bp overlap
HNF4A 4 datasets
ChIP HCCLM3_High-Glucose GSE101553.HNF4A.HCCLM3_High-Glucose 179 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 224 bp overlap
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 460 bp overlap
ChIP hiPSC GSE104613.HNF4A.hiPSC 252 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 333 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 461 bp overlap
Isl1 1 dataset
Motif DE_48h DE_48h-Isl1_MA1608.2 7 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 272 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 415 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 390 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 164 bp overlap
KLF4 1 dataset
ChIP MCF-7 ENCFF948KTQ 528 bp overlap
LARP7 1 dataset
ChIP MCF-7 ENCFF292RJZ 56 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 233 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 353 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 243 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 133 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 248 bp overlap
NR5A2 1 dataset
ChIP MCF-7 GSE47027.NR5A2.MCF-7 265 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 204 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 203 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 399 bp overlap
ChIP HEK293 ENCFF875BDB 197 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 377 bp overlap
OTX1 1 dataset
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
PAX3 1 dataset
Motif DE_48h DE_48h-PAX3_MA0780.1 10 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 317 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 322 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 186 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 435 bp overlap
PITX1 1 dataset
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 533 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 391 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 253 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 196 bp overlap
Pax7 1 dataset
Motif DE_48h DE_48h-Pax7_MA0680.3 10 bp overlap
RARA 2 datasets
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 227 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 283 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 179 bp overlap
RELA 1 dataset
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 171 bp overlap
RHOXF1 1 dataset
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
RNF2 1 dataset
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 308 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 303 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 533 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 388 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 331 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 432 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 337 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 152 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SMARCB1 3 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 266 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 312 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 369 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 336 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 490 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 193 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 184 bp overlap
STAT3 3 datasets
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 248 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 383 bp overlap
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 288 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 201 bp overlap
TBX2 2 datasets
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
ChIP Kelly GSE94822.TBX2.Kelly 373 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 144 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 425 bp overlap
TFAP2C 2 datasets
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 179 bp overlap
ChIP WA09 GSE105081.TFAP2C.WA09 160 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 272 bp overlap
TSC22D2 1 dataset
ChIP MCF-7 ENCFF588BUN 61 bp overlap
TWIST1 1 dataset
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 156 bp overlap
VENTX 1 dataset
Motif DE_48h DE_48h-VENTX_MA0724.1 9 bp overlap
ZBTB17 2 datasets
Motif DE_48h DE_48h-ZBTB17_MA2102.1 8 bp overlap
ChIP HEK293 ENCFF865LIO 469 bp overlap
ZBTB6 3 datasets
ChIP HEK293 ENCFF881ECZ 261 bp overlap
ChIP HEK293 ENCSR619OUC.ZBTB6.HEK293 363 bp overlap
ChIP HEK293 GSE76494.ZBTB6.HEK293 326 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 170 bp overlap
ZMYND8 1 dataset
ChIP HEK293_Flag-ZMYND8 GSE81696.ZMYND8.HEK293_Flag-ZMYND8 185 bp overlap
ZNF143 1 dataset
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 157 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 278 bp overlap
ZNF322 1 dataset
ChIP HEK293 GSE76494.ZNF322.HEK293 163 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 432 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 246 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 317 bp overlap
ZNF784 1 dataset
Motif DE_48h DE_48h-ZNF784_MA1717.2 8 bp overlap