chr3 : 60,064,339 60,065,083
744 bp 93 TFs 0 linked genes
This 744 bp open chromatin element has no linked target genes and is bound by 93 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:60,059,339 – 60,070,083
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
AR 1 dataset
ChIP fibroblast_prostate-cancer_PCDF2 GSE126852.AR.fibroblast_prostate-cancer_PCDF2 250 bp overlap
ARNTL 3 datasets
ChIP U2OS GSE130602.ARNTL.U2OS 179 bp overlap
ChIP U2OS_DMSO GSE130506.ARNTL.U2OS_DMSO 179 bp overlap
ChIP U2OS_cordycepin GSE130506.ARNTL.U2OS_cordycepin 181 bp overlap
ATF3 3 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 138 bp overlap
ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 99 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 141 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCFF037PYH 397 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 296 bp overlap
BACH1 1 dataset
ChIP GM12878 ENCSR636MKU.BACH1.GM12878 198 bp overlap
BRD2 4 datasets
ChIP MDA-MB-231_JQ1 GSE116879.BRD2.MDA-MB-231_JQ1 214 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_rDNA 214 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 122 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 146 bp overlap
BRD4 9 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 113 bp overlap
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 127 bp overlap
ChIP HeLa GSE151038.BRD4.HeLa 227 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD4.MDA-MB-231_JQ1 324 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 204 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 204 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_rDNA 324 bp overlap
ChIP MOLT-4_DMSO GSE79288.BRD4.MOLT-4_DMSO 190 bp overlap
ChIP T-cell_DMSO GSE138084.BRD4.T-cell_DMSO 189 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 221 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 172 bp overlap
CDK9 1 dataset
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 142 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_neural-crest-cell GSE108506.CHD7.hiPSC_derived_neural-crest-cell 196 bp overlap
CREBBP 1 dataset
ChIP fibroblast_senescent GSE106146.CREBBP.fibroblast_senescent 187 bp overlap
CRY2 1 dataset
ChIP U2OS GSE130602.CRY2.U2OS 68 bp overlap
DAXX 1 dataset
ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 143 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCFF681AJV 415 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 315 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 351 bp overlap
EP300 1 dataset
ChIP fibroblast_senescent GSE106146.EP300.fibroblast_senescent 164 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 280 bp overlap
ESR1 2 datasets
ChIP breast_tumor_Female_6 GSE104399.ESR1.breast_tumor_Female_6 133 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 744 bp overlap
FOS 8 datasets
ChIP CD4 GSE116695.FOS.CD4 204 bp overlap
ChIP CD4_fly-DNA GSE116695.FOS.CD4_fly-DNA 159 bp overlap
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 163 bp overlap
ChIP K-562 ENCSR000DKB.FOS.K-562 117 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 158 bp overlap
ChIP MCF-7 ENCFF282FWZ 203 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 239 bp overlap
ChIP leiomyoma_PT1063 GSE128230.FOS.leiomyoma_PT1063 56 bp overlap
FOSL1 4 datasets
ChIP 143B GSE74230.FOSL1.143B 180 bp overlap
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 198 bp overlap
ChIP MDA-MB-231 GSE95303.FOSL1.MDA-MB-231 154 bp overlap
ChIP MG-63-3 GSE74230.FOSL1.MG-63-3 225 bp overlap
FOSL2 5 datasets
ChIP LPS141 GSE111253.FOSL2.LPS141 129 bp overlap
ChIP MCF-7 ENCSR000BUI.FOSL2.MCF-7 112 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 193 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 187 bp overlap
ChIP hESC GSE69539.FOSL2.hESC 188 bp overlap
FOXA1 5 datasets
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 215 bp overlap
ChIP breast_tumor_Female_7 GSE104399.FOXA1.breast_tumor_Female_7 253 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 385 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 212 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 199 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 659 bp overlap
ChIP DE DE-FOXA2-2 665 bp overlap
FOXF1 1 dataset
ChIP GIST48 GSE106624.FOXF1.GIST48 159 bp overlap
FOXK2 2 datasets
ChIP GM12878 ENCSR861JUQ.FOXK2.GM12878 289 bp overlap
ChIP K-562 ENCSR302AWT.FOXK2.K-562 242 bp overlap
FOXL2 5 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 187 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 203 bp overlap
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 240 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 261 bp overlap
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 374 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 248 bp overlap
GATA1 1 dataset
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 55 bp overlap
GATA2 2 datasets
ChIP ESF GSE108408.GATA2.ESF 196 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 147 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 477 bp overlap
ChIP DE DE-GATA4-2 524 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 477 bp overlap
ChIP DE DE-GATA6-2 500 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 443 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 431 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 418 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 351 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 463 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 449 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 264 bp overlap
HNF4A 1 dataset
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 149 bp overlap
IKZF1 3 datasets
ChIP GM12878 ENCFF824TGK 356 bp overlap
ChIP GM12878 ENCFF824TGK 157 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 193 bp overlap
IKZF2 2 datasets
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 312 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 277 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 82 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 287 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 428 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 238 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 447 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 266 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 447 bp overlap
ChIP MCF-7_E2 GSE102410.JUN.MCF-7_E2 171 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.JUN.MCF-7_Tamoxifen 184 bp overlap
ChIP MCF-7_vehicle GSE102410.JUN.MCF-7_vehicle 160 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 142 bp overlap
JUNB 4 datasets
ChIP CD4 GSE116695.JUNB.CD4 393 bp overlap
ChIP CD4_fly-DNA GSE116695.JUNB.CD4_fly-DNA 380 bp overlap
ChIP K-562 ENCSR000DJY.JUNB.K-562 120 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 174 bp overlap
JUND 3 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 152 bp overlap
ChIP K562 ENCFF830LVJ 219 bp overlap
ChIP PC-3 GSE29808.JUND.PC-3 195 bp overlap
KMT2A 1 dataset
ChIP blood_cord GSE83671.KMT2A.blood_cord 346 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 208 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 166 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 56 bp overlap
MNT 2 datasets
ChIP Hep-G2 ENCSR261EDU.MNT.Hep-G2 267 bp overlap
ChIP HepG2 ENCFF701PYP 385 bp overlap
MTA2 4 datasets
ChIP GM12878 ENCFF615CWQ 480 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 553 bp overlap
ChIP RH4 GSE155861.MTA2.RH4 273 bp overlap
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 98 bp overlap
MYB 3 datasets
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 180 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 237 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 138 bp overlap
MYOD1 1 dataset
ChIP myoblast GSE50413.MYOD1.myoblast 149 bp overlap
NCAPH2 2 datasets
ChIP IMR-90_Triptolide-5min GSE118494.NCAPH2.IMR-90_Triptolide-5min 312 bp overlap
ChIP IMR-90_alpha-amanitin-1H GSE118494.NCAPH2.IMR-90_alpha-amanitin-1H 139 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 454 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 336 bp overlap
NFATC2 3 datasets
ChIP CD4 GSE116695.NFATC2.CD4 281 bp overlap
ChIP CD4_CD28-ab GSE116695.NFATC2.CD4_CD28-ab 202 bp overlap
ChIP CD4_fly-DNA_no-CD28 GSE116695.NFATC2.CD4_fly-DNA_no-CD28 353 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 207 bp overlap
NR2F2 1 dataset
ChIP uterus_STROMA_ENDOMETRIUM GSE52008.NR2F2.uterus_STROMA_ENDOMETRIUM 143 bp overlap
NR3C1 3 datasets
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 154 bp overlap
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 53 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 376 bp overlap
PGR 4 datasets
ChIP AB32 GSE31129.PGR.AB32 290 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 260 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 293 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 223 bp overlap
POLR2A 2 datasets
ChIP gastroesophageal sphincter ENCFF070PCA 117 bp overlap
ChIP stomach ENCFF820WZN 111 bp overlap
PPARG 1 dataset
ChIP ASC GSE21366.PPARG.ASC 75 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 364 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 149 bp overlap
RCOR1 1 dataset
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 142 bp overlap
RELA 2 datasets
ChIP CD4_Th1_DMSO GSE62482.RELA.CD4_Th1_DMSO 122 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 121 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 327 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE76181.RUNX1.Jurkat 183 bp overlap
RXR 1 dataset
ChIP macrophage ERP008801.RXR.macrophage 175 bp overlap
RXRA 2 datasets
ChIP JMSU-1 GSE107734.RXRA.JMSU-1 131 bp overlap
ChIP JMSU-1_RXRA-S427F GSE107734.RXRA.JMSU-1_RXRA-S427F 140 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 314 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 386 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 457 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 413 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 325 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 296 bp overlap
SMAD3 1 dataset
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 137 bp overlap
SMARCA2 3 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 195 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 169 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 196 bp overlap
SMARCA4 8 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 314 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 192 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 227 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA4.NPC_R1159Q 150 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 235 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 241 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 185 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 407 bp overlap
SMARCB1 2 datasets
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCB1.TTC-1240_SMARCB1-FL 163 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 196 bp overlap
SMARCC1 5 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 127 bp overlap
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 195 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 199 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCC1.TTC-1240_SMARCB1-FL 170 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 157 bp overlap
SS18-SSX 4 datasets
ChIP fibroblast_23aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_23aa-SSX-Tail 258 bp overlap
ChIP fibroblast_6aa GSE139053.SS18-SSX.fibroblast_6aa 161 bp overlap
ChIP fibroblast_7aa GSE139053.SS18-SSX.fibroblast_7aa 138 bp overlap
ChIP fibroblast_L169A GSE139053.SS18-SSX.fibroblast_L169A 256 bp overlap
STAT3 1 dataset
ChIP SUM159PT GSE152203.STAT3.SUM159PT 126 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 329 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 190 bp overlap
TBX21 3 datasets
ChIP GM12878 ENCFF951HUW 401 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 620 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 166 bp overlap
TCF12 2 datasets
ChIP GM12878 ENCFF433DMU 286 bp overlap
ChIP GM12878 ENCSR725VFL.TCF12.GM12878 214 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 291 bp overlap
TCF7L2 3 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 178 bp overlap
ChIP HCT116 ENCFF038POZ 248 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 237 bp overlap
TEAD4 1 dataset
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 134 bp overlap
TP53 2 datasets
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 142 bp overlap
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 208 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 173 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 121 bp overlap
ZNF777 1 dataset
ChIP HEK293T GSE78099.ZNF777.HEK293T 70 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 166 bp overlap