chr2 : 45,004,493 45,005,116
623 bp 86 TFs 2 linked genes
This 623 bp open chromatin element is linked to SIX2 and ENSG00000231156 and is bound by 86 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SIX2 4.3 kb Proximal Proximity
ENSG00000231156 8.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:44,999,493 – 45,010,116
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 178 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 461 bp overlap
ARNT 2 datasets
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 252 bp overlap
ChIP RCC4 GSE85352.ARNT.RCC4 186 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 588 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 598 bp overlap
BACH1 1 dataset
ChIP WA01 ENCSR000EBQ.BACH1.WA01 155 bp overlap
BRD4 2 datasets
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 623 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 257 bp overlap
CBX8 1 dataset
ChIP H1 ENCFF095JHA 559 bp overlap
CHD1 2 datasets
ChIP H1 ENCFF998XEK 440 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 545 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 236 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 235 bp overlap
CTBP2 3 datasets
ChIP H1 ENCFF329MAX 523 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 84 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 489 bp overlap
CTCF 1 dataset
ChIP spleen ENCFF065CBS 278 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 363 bp overlap
ChIP BLaER1 ENCFF364PUR 259 bp overlap
ChIP BLaER1 ENCFF680YXW 320 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 200 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 324 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 213 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 231 bp overlap
ETS1 6 datasets
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 164 bp overlap
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 164 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 186 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 164 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 164 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 623 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
EZH2 34 datasets
ChIP B cell ENCFF803EMO 274 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 500 bp overlap
ChIP GM12878 ENCFF635TDF 226 bp overlap
ChIP GM23248 ENCFF404ZHM 446 bp overlap
ChIP GM23248 ENCFF506FWX 445 bp overlap
ChIP GM23248 ENCFF506FWX 315 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 601 bp overlap
ChIP GM23338 ENCFF613YON 623 bp overlap
ChIP GM23338 ENCFF886DXX 623 bp overlap
ChIP H1 ENCFF232NZA 623 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 533 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 560 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 611 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 597 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 496 bp overlap
ChIP astrocyte ENCFF365JTP 623 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 623 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 59 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 575 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 623 bp overlap
ChIP fibroblast of lung ENCFF479BAW 380 bp overlap
ChIP fibroblast of lung ENCFF479BAW 403 bp overlap
ChIP hESC GSE113817.EZH2.hESC 463 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 312 bp overlap
ChIP hepatocyte ENCFF118DKH 97 bp overlap
ChIP hepatocyte ENCFF118DKH 195 bp overlap
ChIP hepatocyte ENCFF552DZB 623 bp overlap
ChIP keratinocyte ENCFF070STK 423 bp overlap
ChIP keratinocyte ENCFF070STK 610 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 484 bp overlap
ChIP neural cell ENCFF610EPB 161 bp overlap
ChIP neural cell ENCFF610EPB 379 bp overlap
ChIP neural progenitor cell ENCFF018MKA 623 bp overlap
ChIP neural progenitor cell ENCFF472NFV 623 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 419 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GABPA 2 datasets
ChIP H1 ENCFF739QFD 341 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 223 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 318 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 557 bp overlap
ChIP H1 ENCFF353UJQ 504 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 275 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 145 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 471 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 357 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 383 bp overlap
JUN 7 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 188 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 92 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 404 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 344 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 90 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 453 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 315 bp overlap
KAT7 1 dataset
ChIP WTC11 ENCFF581TPB 506 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 526 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 310 bp overlap
KLF10 1 dataset
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif ES_0h ES_0h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF5 1 dataset
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 541 bp overlap
MAZ 1 dataset
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 219 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 270 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 426 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 623 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 122 bp overlap
PATZ1 1 dataset
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 623 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 309 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 623 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 623 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 543 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 623 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 198 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 498 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 623 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 449 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 190 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 623 bp overlap
ChIP NCCIT GSE71675.RNF2.NCCIT 413 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 481 bp overlap
SAP30 2 datasets
ChIP H1 ENCFF149IOE 388 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 422 bp overlap
SIN3A 2 datasets
ChIP H1 ENCFF042ZSL 378 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 300 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 509 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 559 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 381 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 599 bp overlap
SMAD2_3 7 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 273 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 283 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 454 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 241 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 205 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 409 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 461 bp overlap
SP1 3 datasets
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 179 bp overlap
ChIP WTC11 ENCFF688PEU 352 bp overlap
SP2 1 dataset
Motif ES_0h ES_0h-SP2_MA0516.3 9 bp overlap
SP4 1 dataset
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 400 bp overlap
SRSF7 1 dataset
ChIP Hep-G2 GSE120104.SRSF7.Hep-G2 251 bp overlap
SSRP1 1 dataset
ChIP HT-1080_AclacinomycinA GSE107595.SSRP1.HT-1080_AclacinomycinA 428 bp overlap
SUZ12 9 datasets
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 564 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 555 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF507HGF 199 bp overlap
ChIP H1 ENCFF881NFR 623 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 190 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 623 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 623 bp overlap
ChIP NT2/D1 ENCFF574SXS 527 bp overlap
TBP 1 dataset
ChIP hiPSC_WTa_RNase-pos GSE128135.TBP.hiPSC_WTa_RNase-pos 222 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 188 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 206 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 623 bp overlap
ChIP H1 ENCFF778PAX 220 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 371 bp overlap
THAP1 1 dataset
Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap
TP63 2 datasets
ChIP foreskin GSE126390.TP63.foreskin 98 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 153 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 386 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 146 bp overlap
YY1 2 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 314 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 247 bp overlap
ZBED4 1 dataset
Motif ES_0h ES_0h-ZBED4_MA2328.1 10 bp overlap
ZBTB14 1 dataset
Motif ES_0h ES_0h-ZBTB14_MA1650.2 8 bp overlap
ZNF148 1 dataset
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF281 1 dataset
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF549 2 datasets
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
ZNF740 1 dataset
Motif ES_0h ES_0h-ZNF740_MA0753.3 10 bp overlap
Zic3 1 dataset
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap