chr2 : 31,207,685 31,208,268
583 bp 98 TFs 1 linked gene
This 583 bp open chromatin element is linked to EHD3 and is bound by 98 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
EHD3 26.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:31,202,685 – 31,213,268
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 320 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 301 bp overlap
BARX2 1 dataset
Motif DE_72h DE_72h-BARX2_MA1471.2 9 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 325 bp overlap
BRD4 9 datasets
ChIP MM1-S GSE43743.BRD4.MM1-S 471 bp overlap
ChIP MM1-S GSE45984.BRD4.MM1-S 447 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 326 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 398 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 406 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 444 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 492 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 444 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 527 bp overlap
CDK9 4 datasets
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 218 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 267 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 171 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 190 bp overlap
CTCF 21 datasets
Motif DE_72h DE_72h-CTCF_MA1929.2 31 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 159 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 270 bp overlap
ChIP GM10248 ENCFF083HVS 165 bp overlap
ChIP GM10248 ENCFF226VLZ 165 bp overlap
ChIP GM12878 ENCFF635MMB 217 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 373 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 116 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 297 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 456 bp overlap
ChIP MM.1S ENCFF869JMQ 404 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 270 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 229 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 178 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 255 bp overlap
ChIP heart right ventricle ENCFF577TID 386 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 201 bp overlap
ChIP keratinocyte ENCFF291YDC 185 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 164 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 134 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 407 bp overlap
Crx 1 dataset
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 137 bp overlap
DPRX 1 dataset
Motif DE_72h DE_72h-DPRX_MA1480.2 9 bp overlap
EHF 1 dataset
Motif DE_60h DE_60h-EHF_MA0598.4 9 bp overlap
ELF1 3 datasets
Motif DE_60h DE_60h-ELF1_MA0473.4 9 bp overlap
ChIP GM12878 ENCFF692SMY 457 bp overlap
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 242 bp overlap
ELF2 1 dataset
Motif DE_60h DE_60h-ELF2_MA1483.3 10 bp overlap
ELF3 1 dataset
Motif DE_60h DE_60h-ELF3_MA0640.3 9 bp overlap
ELF4 1 dataset
Motif DE_60h DE_60h-ELF4_MA0641.1 12 bp overlap
ELK4 1 dataset
Motif DE_60h DE_60h-ELK4_MA0076.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 255 bp overlap
ESR1 1 dataset
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 240 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 205 bp overlap
ETV1 1 dataset
Motif DE_60h DE_60h-ETV1_MA0761.3 9 bp overlap
ETV6 1 dataset
Motif DE_60h DE_60h-ETV6_MA0645.2 9 bp overlap
ETV7 1 dataset
Motif DE_60h DE_60h-ETV7_MA1708.2 9 bp overlap
Elf5 1 dataset
Motif DE_60h DE_60h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_60h DE_60h-Erg_MA0474.4 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 417 bp overlap
ChIP DE DE-FOXA2-2 485 bp overlap
GABPA 1 dataset
Motif DE_60h DE_60h-GABPA_MA0062.4 10 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 329 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-2 350 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 303 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 396 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 325 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 402 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 156 bp overlap
GSC 1 dataset
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
HSF2 3 datasets
Motif DE_48h DE_48h-HSF2_MA0770.1 13 bp overlap
Motif DE_60h DE_60h-HSF2_MA0770.1 13 bp overlap
Motif DE_72h DE_72h-HSF2_MA0770.1 13 bp overlap
IKZF1 3 datasets
ChIP GM12878 ENCFF753XDO 535 bp overlap
ChIP GM12878 ENCFF824TGK 547 bp overlap
ChIP GM12878 ENCFF824TGK 336 bp overlap
IKZF2 1 dataset
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
INSM1 1 dataset
Motif DE_60h DE_60h-INSM1_MA0155.1 12 bp overlap
Ikzf3 1 dataset
Motif DE_60h DE_60h-Ikzf3_MA1992.2 9 bp overlap
Isl1 1 dataset
Motif DE_72h DE_72h-Isl1_MA1608.2 7 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 406 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 418 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 427 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 448 bp overlap
LIN54 1 dataset
Motif DE_72h DE_72h-LIN54_MA0619.2 7 bp overlap
MED1 5 datasets
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 359 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 289 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 382 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 407 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 458 bp overlap
MEF2A 3 datasets
Motif DE_48h DE_48h-MEF2A_MA0052.5 10 bp overlap
Motif DE_60h DE_60h-MEF2A_MA0052.5 10 bp overlap
Motif DE_72h DE_72h-MEF2A_MA0052.5 10 bp overlap
MEF2B 3 datasets
Motif DE_48h DE_48h-MEF2B_MA0660.1 12 bp overlap
Motif DE_60h DE_60h-MEF2B_MA0660.1 12 bp overlap
Motif DE_72h DE_72h-MEF2B_MA0660.1 12 bp overlap
MEF2C 3 datasets
Motif DE_48h DE_48h-MEF2C_MA0497.2 11 bp overlap
Motif DE_60h DE_60h-MEF2C_MA0497.2 11 bp overlap
Motif DE_72h DE_72h-MEF2C_MA0497.2 11 bp overlap
MEIS1 2 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MGA 3 datasets
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 225 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 220 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 163 bp overlap
NFKB2 2 datasets
Motif DE_60h DE_60h-NFKB2_MA0778.2 11 bp overlap
ChIP L1236 GSE63736.NFKB2.L1236 194 bp overlap
OTX1 1 dataset
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 203 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 200 bp overlap
PITX1 1 dataset
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
RAD21 3 datasets
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 148 bp overlap
ChIP GM12878 ENCSR000EAC.RAD21.GM12878 205 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 161 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 354 bp overlap
RHOXF1 1 dataset
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
SKIL 2 datasets
ChIP GM12878 ENCFF171OVM 519 bp overlap
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 284 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 253 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 525 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 498 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 583 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 542 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 502 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 574 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 500 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 559 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 200 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 216 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 262 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 411 bp overlap
SNAI2 1 dataset
ChIP PC-9_1DF GSE131687.SNAI2.PC-9_1DF 264 bp overlap
TBX1 3 datasets
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TBX15 3 datasets
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap
TBX18 3 datasets
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX20 3 datasets
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap
TBX21 4 datasets
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 249 bp overlap
TBX5 3 datasets
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
TEAD1 5 datasets
Motif DE_48h DE_48h-TEAD1_MA0090.4 9 bp overlap
Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap
Motif DE_72h DE_72h-TEAD1_MA0090.4 9 bp overlap
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 306 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 237 bp overlap
TEAD2 3 datasets
Motif DE_48h DE_48h-TEAD2_MA1121.2 7 bp overlap
Motif DE_60h DE_60h-TEAD2_MA1121.2 7 bp overlap
Motif DE_72h DE_72h-TEAD2_MA1121.2 7 bp overlap
TEAD3 3 datasets
Motif DE_48h DE_48h-TEAD3_MA0808.1 8 bp overlap
Motif DE_60h DE_60h-TEAD3_MA0808.1 8 bp overlap
Motif DE_72h DE_72h-TEAD3_MA0808.1 8 bp overlap
TEAD4 11 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 232 bp overlap
ChIP BJ_fibroblast_CD13-pos GSE114367.TEAD4.BJ_fibroblast_CD13-pos 214 bp overlap
Motif DE_48h DE_48h-TEAD4_MA0809.3 8 bp overlap
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 362 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 383 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 270 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 497 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 227 bp overlap
Tbx6 3 datasets
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
Motif DE_72h DE_72h-Tbx6_MA1567.3 9 bp overlap
VENTX 1 dataset
Motif DE_72h DE_72h-VENTX_MA0724.1 9 bp overlap
YY1AP1 2 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 437 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 502 bp overlap
ZBTB11 1 dataset
Motif DE_60h DE_60h-ZBTB11_MA2329.1 9 bp overlap
ZBTB7A 1 dataset
Motif DE_60h DE_60h-ZBTB7A_MA0750.3 9 bp overlap
ZNF136 2 datasets
Motif DE_48h DE_48h-ZNF136_MA1588.1 15 bp overlap
Motif DE_60h DE_60h-ZNF136_MA1588.1 15 bp overlap
ZNF140 3 datasets
Motif DE_48h DE_48h-ZNF140_MA1589.2 19 bp overlap
Motif DE_60h DE_60h-ZNF140_MA1589.2 19 bp overlap
Motif DE_72h DE_72h-ZNF140_MA1589.2 19 bp overlap
ZNF175 1 dataset
Motif DE_60h DE_60h-ZNF175_MA2332.1 9 bp overlap
ZNF257 3 datasets
Motif DE_48h DE_48h-ZNF257_MA1710.2 10 bp overlap
Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap
Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap
ZNF274 1 dataset
Motif DE_72h DE_72h-ZNF274_MA1592.2 12 bp overlap
ZNF384 1 dataset
ChIP GM12878 ENCFF229VSP 265 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 161 bp overlap
ZNF547 1 dataset
Motif DE_72h DE_72h-ZNF547_MA2334.1 13 bp overlap
ZNF677 3 datasets
Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap
Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap
Motif DE_72h DE_72h-ZNF677_MA2101.1 12 bp overlap
ZNF680 2 datasets
Motif DE_48h DE_48h-ZNF680_MA1729.2 11 bp overlap
Motif DE_60h DE_60h-ZNF680_MA1729.2 11 bp overlap
ZNF75A 2 datasets
Motif DE_48h DE_48h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_60h DE_60h-ZNF75A_MA2097.1 12 bp overlap
ZNF85 3 datasets
Motif DE_48h DE_48h-ZNF85_MA1720.2 12 bp overlap
Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap
Motif DE_72h DE_72h-ZNF85_MA1720.2 12 bp overlap