chr2 : 30,652,223 30,652,701
478 bp 94 TFs 0 linked genes
This 478 bp open chromatin element has no linked target genes and is bound by 94 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:30,647,223 – 30,657,701
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
94 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 237 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 478 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 263 bp overlap
BCL11A 4 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 145 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 141 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 190 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 178 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 198 bp overlap
BRD4 1 dataset
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 272 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 331 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 136 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 478 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 260 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 327 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 113 bp overlap
CTCF 2 datasets
ChIP IMR-90 ENCFF887MRH 152 bp overlap
ChIP IMR-90 ENCSR000EFI.CTCF.IMR-90 127 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF844FIP 203 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 242 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 343 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 224 bp overlap
ESRRA 1 dataset
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
ESRRB 1 dataset
Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
Esrrg 1 dataset
Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 435 bp overlap
ChIP DE DE-FOXA2-2 478 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 391 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 293 bp overlap
ChIP DE DE-GATA4-2 416 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 267 bp overlap
ChIP DE DE-GATA6-2 418 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 278 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 270 bp overlap
GLI3 1 dataset
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 134 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 307 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 290 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 328 bp overlap
JUND 3 datasets
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 143 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 129 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 310 bp overlap
MCM5 1 dataset
ChIP K-562 ENCSR628APV.MCM5.K-562 204 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 304 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 189 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 195 bp overlap
ChIP H1 ENCFF747ZPQ 173 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 478 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 381 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 291 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 478 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 478 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 431 bp overlap
ChIP hESC GSE20650.NANOG.hESC 234 bp overlap
ChIP hESC GSE18292.NANOG.hESC 236 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
NR2F2 1 dataset
Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap
NR5A1 1 dataset
Motif DE_12h DE_12h-NR5A1_MA1540.3 12 bp overlap
NR6A1 1 dataset
Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr5A2 1 dataset
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
POU5F1 5 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 383 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 478 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 478 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 225 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 186 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 362 bp overlap
Ppara 1 dataset
Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP IMR-90 ENCFF752PTH 145 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 146 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 184 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0071.1 10 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 148 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 218 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 123 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 256 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 218 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 363 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 383 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 358 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 273 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 378 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 364 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 155 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 466 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 306 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 277 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 206 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 215 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 207 bp overlap
SMC3 1 dataset
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 65 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 390 bp overlap
SOX18 1 dataset
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
SOX2 4 datasets
ChIP H9 GSE46837.SOX2.H9 235 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 212 bp overlap
ChIP hESC GSE69479.SOX2.hESC 222 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 349 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 296 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 316 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 231 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 359 bp overlap
ChIP H1 ENCFF778PAX 126 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 239 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP H1 ENCFF524BTL 253 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 190 bp overlap
ZBTB7B 1 dataset
Motif DE_12h DE_12h-ZBTB7B_MA0694.2 10 bp overlap
ZBTB7C 1 dataset
Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap
ZKSCAN3 1 dataset
Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap