chrX : 25,004,448 25,005,169
721 bp 82 TFs 1 linked gene
This 721 bp open chromatin element is linked to ARX and is bound by 82 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ARX 2.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:24,999,448 – 25,010,169
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP K-562 ENCSR641BSL.AGO1.K-562 388 bp overlap
ChIP K-562 GSE120104.AGO1.K-562 388 bp overlap
AR 4 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 541 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 542 bp overlap
ChIP myofibroblast GSE90772.AR.myofibroblast 355 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 540 bp overlap
ARID1A 3 datasets
ChIP H9 GSE139260.ARID1A.H9 231 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 359 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 204 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 248 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 219 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 158 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 594 bp overlap
BRD4 10 datasets
ChIP 22Rv1_DHT-ABBV-075 GSE118247.BRD4.22Rv1_DHT-ABBV-075 268 bp overlap
ChIP 22Rv1_DHT-ABBV-744 GSE118247.BRD4.22Rv1_DHT-ABBV-744 431 bp overlap
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 265 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 240 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 484 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 297 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 306 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 706 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 290 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 267 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 419 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 668 bp overlap
CBX7 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 461 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 339 bp overlap
ChIP H1 ENCFF095JHA 563 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 523 bp overlap
CTBP2 4 datasets
ChIP H1 ENCFF329MAX 426 bp overlap
ChIP H1 ENCFF329MAX 476 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 311 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 373 bp overlap
CTCF 4 datasets
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 504 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 421 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 154 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 162 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 326 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 507 bp overlap
ELF1 2 datasets
ChIP A-549 GSE122203.ELF1.A-549 121 bp overlap
ChIP ME-1 GSE46044.ELF1.ME-1 359 bp overlap
ERG 4 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 382 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 198 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 255 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 239 bp overlap
ESR1 9 datasets
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 400 bp overlap
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 480 bp overlap
ChIP MCF-7_estradiol_45min_ChIP-and-reChIP GSE99626.ESR1.MCF-7_estradiol_45min_ChIP-and-reChIP 325 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 545 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 513 bp overlap
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 115 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 465 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 545 bp overlap
ChIP VCaP_E2_ERA GSE43985.ESR1.VCaP_E2_ERA 177 bp overlap
ESR2 1 dataset
ChIP MDA-MB-231_estradiol GSE108979.ESR2.MDA-MB-231_estradiol 316 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 209 bp overlap
EZH2 22 datasets
ChIP GM23248 ENCFF404ZHM 167 bp overlap
ChIP GM23338 ENCFF613YON 63 bp overlap
ChIP GM23338 ENCFF613YON 663 bp overlap
ChIP H1 ENCFF232NZA 721 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 574 bp overlap
ChIP PC-3 ENCFF855OUB 477 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 721 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 472 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 85 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 458 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 173 bp overlap
ChIP fibroblast of lung ENCFF479BAW 540 bp overlap
ChIP fibroblast of lung ENCFF479BAW 521 bp overlap
ChIP hESC GSE113817.EZH2.hESC 591 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 409 bp overlap
ChIP hepatocyte ENCFF118DKH 51 bp overlap
ChIP hepatocyte ENCFF552DZB 721 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.EZH2.hiPSC_WTa_RNase-neg 318 bp overlap
ChIP keratinocyte ENCFF070STK 466 bp overlap
ChIP keratinocyte ENCFF070STK 611 bp overlap
ChIP neural progenitor cell ENCFF018MKA 721 bp overlap
ChIP neural progenitor cell ENCFF472NFV 721 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 293 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 343 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 460 bp overlap
HDAC2 3 datasets
ChIP PC-3 GSE147455.HDAC2.PC-3 158 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 254 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 352 bp overlap
HDAC6 1 dataset
ChIP GM12878 ENCSR933EYC.HDAC6.GM12878 373 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 271 bp overlap
HIF1A 2 datasets
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 191 bp overlap
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 178 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 205 bp overlap
HNRNPL 2 datasets
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 453 bp overlap
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 403 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 153 bp overlap
INO80 3 datasets
ChIP Hep-G2 GSE97411.INO80.Hep-G2 266 bp overlap
ChIP Hep-G2 GSE97411.INO80.Hep-G2 361 bp overlap
ChIP Huh-7 GSE97411.INO80.Huh-7 721 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 250 bp overlap
KDM5B 2 datasets
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 114 bp overlap
ChIP T-47D GSE46055.KDM5B.T-47D 168 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 357 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 240 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 270 bp overlap
MYCN 4 datasets
ChIP BE2C GSE80151.MYCN.BE2C 179 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 689 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 373 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 202 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 460 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 244 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 444 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 673 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 530 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 614 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 105 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 335 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 355 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 516 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 302 bp overlap
PCGF2 3 datasets
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 509 bp overlap
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 128 bp overlap
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 525 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 452 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 557 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 223 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 721 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 583 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
RBM22 2 datasets
ChIP K-562 GSE120104.RBM22.K-562 224 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 199 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 274 bp overlap
REST 1 dataset
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 152 bp overlap
RNF2 8 datasets
ChIP H1 ENCFF239FFS 286 bp overlap
ChIP H1 ENCFF239FFS 311 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.RNF2.HEK293T_PCGF1356fl 298 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.RNF2.HEK293T_PCGF1356fl_OHT 345 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.RNF2.HEK293T_PCGF135fl 301 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.RNF2.HEK293T_PCGF135fl_OHT 324 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.RNF2.HEK293T_PCGF2fl 362 bp overlap
ChIP HEK293T_RING1Bfl GSE119618.RNF2.HEK293T_RING1Bfl 323 bp overlap
RUNX1 1 dataset
ChIP ME-1 GSE46044.RUNX1.ME-1 281 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 390 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 199 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 590 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 190 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 395 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 298 bp overlap
SMAD3 1 dataset
ChIP hESC GSE29422.SMAD3.hESC 146 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 288 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 414 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 366 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 357 bp overlap
SREBP2 1 dataset
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 484 bp overlap
SRSF7 1 dataset
ChIP Hep-G2 GSE120104.SRSF7.Hep-G2 251 bp overlap
SS18 3 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 721 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 548 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 400 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 173 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 283 bp overlap
SUZ12 18 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 599 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 721 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.SUZ12.HEK293T_PCGF1352fl 333 bp overlap
ChIP HEK293T_PCGF1352fl_OHT GSE119618.SUZ12.HEK293T_PCGF1352fl_OHT 313 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 487 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.SUZ12.HEK293T_PCGF1356fl_OHT 420 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 521 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 540 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 541 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 444 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 618 bp overlap
ChIP NT2/D1 ENCFF574SXS 397 bp overlap
ChIP NT2/D1 ENCFF574SXS 216 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 574 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 694 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.SUZ12.hiPSC_WTb_RNase-neg 303 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 151 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 673 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 605 bp overlap
YY1 2 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 467 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 97 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_CSS GSE123089.ZBTB7A.VCaP_CSS 350 bp overlap
ZFX 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 574 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCFF799ATK 147 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 177 bp overlap