chr21 : 34,746,520 – 34,747,002
482 bp 89 TFs 1 linked gene
This 482 bp open chromatin element is linked to LINC01426 and is bound by 89 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01426 684 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr21:34,741,520 – 34,752,002
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
ATF1 2 datasets
ChIP K562 ENCFF817JQF 56 bp overlap
ChIP K562 ENCFF980NSF 224 bp overlap
ATF3 1 dataset
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 132 bp overlap
BCL6 1 dataset
ChIP HepG2 ENCFF423EJH 65 bp overlap
BRD4 10 datasets
ChIP LPS141 GSE111253.BRD4.LPS141 217 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 482 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 482 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD4.MDA-MB-231_JQ1 188 bp overlap
ChIP MDA-MB-231_JQ1-neg_L GSE136151.BRD4.MDA-MB-231_JQ1-neg_L 185 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 194 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 194 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_rDNA 188 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 308 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 308 bp overlap
BRD9 2 datasets
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 261 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 259 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 161 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 141 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 242 bp overlap
CEBPA 1 dataset
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 138 bp overlap
CEBPB 1 dataset
ChIP MV4-11 GSE88746.CEBPB.MV4-11 230 bp overlap
CHD4 1 dataset
ChIP HepG2 ENCFF615GUT 266 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 121 bp overlap
ChIP BLaER1 ENCFF274GAT 182 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 161 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 324 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 242 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 238 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 204 bp overlap
EP300 1 dataset
ChIP HepG2 ENCFF076TMZ 50 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 297 bp overlap
ETS1 1 dataset
ChIP 786-O GSE86092.ETS1.786-O 151 bp overlap
FOSL1 1 dataset
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 216 bp overlap
FOXA1 5 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 311 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 304 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 462 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 389 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 443 bp overlap
FOXA2 6 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 214 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 333 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 176 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 199 bp overlap
ChIP DE DE-FOXA2-1 223 bp overlap
ChIP DE DE-FOXA2-2 134 bp overlap
FOXA3 1 dataset
ChIP HepG2 ENCFF005KGL 71 bp overlap
FOXO1 1 dataset
ChIP HepG2 ENCFF088FIR 86 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 120 bp overlap
GATA1::TAL1 1 dataset
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 159 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 423 bp overlap
ChIP DE DE-GATA4-2 482 bp overlap
ChIP foregut GSE117136.GATA4.foregut 259 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 447 bp overlap
ChIP DE DE-GATA6-2 482 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 414 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 301 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 482 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 462 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 395 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 475 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 399 bp overlap
ChIP foregut GSE117136.GATA6.foregut 271 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 252 bp overlap
HDAC1 2 datasets
ChIP HepG2 ENCFF304IEJ 482 bp overlap
ChIP HepG2 ENCFF304IEJ 228 bp overlap
HDAC2 1 dataset
ChIP HepG2 ENCFF990GUQ 58 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 220 bp overlap
ChIP HepG2 ENCFF854JLR 219 bp overlap
HOXA3 2 datasets
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 65 bp overlap
ChIP HepG2 ENCFF374TCI 115 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 368 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 482 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 342 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 482 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 482 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 475 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 482 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 187 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 456 bp overlap
JUND 1 dataset
ChIP K-562 ENCSR000EGN.JUND.K-562 158 bp overlap
KDM1A 1 dataset
ChIP HepG2 ENCFF240UWG 73 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 437 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 172 bp overlap
LCOR 1 dataset
ChIP HepG2 ENCFF499KCU 70 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 70 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 132 bp overlap
MYC 2 datasets
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
ChIP HepG2 ENCFF575FXK 86 bp overlap
NCOA2 1 dataset
ChIP HepG2 ENCFF853BJJ 50 bp overlap
NCOR1 1 dataset
ChIP HepG2 ENCFF685NAH 103 bp overlap
NFIL3 1 dataset
ChIP HepG2 ENCFF686VLI 256 bp overlap
NR2C2 1 dataset
ChIP Hep-G2 ENCSR559ZKI.NR2C2.Hep-G2 91 bp overlap
NR2F2 1 dataset
ChIP HepG2 ENCFF483TVJ 72 bp overlap
NR2F6 1 dataset
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 123 bp overlap
NR3C1 1 dataset
ChIP MDA-MB-231 GSE152203.NR3C1.MDA-MB-231 239 bp overlap
PAX5 1 dataset
ChIP OCI-Ly7 GSE69558.PAX5.OCI-Ly7 102 bp overlap
PAXIP1 1 dataset
ChIP Hep-G2 ENCSR530ARJ.PAXIP1.Hep-G2 73 bp overlap
PITX1 1 dataset
ChIP HepG2 ENCFF468QTQ 118 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 257 bp overlap
PRDM9 1 dataset
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
RCOR2 1 dataset
ChIP HepG2 ENCFF310RFX 69 bp overlap
RELA 2 datasets
ChIP 786-O GSE86092.RELA.786-O 431 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 122 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 412 bp overlap
RXRA 1 dataset
ChIP liver ENCFF077DAP 50 bp overlap
SALL1 1 dataset
ChIP HepG2 ENCFF426MCK 104 bp overlap
SKI 1 dataset
ChIP Hep-G2 ENCSR754MUD.SKI.Hep-G2 56 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 360 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 305 bp overlap
SMARCC1 1 dataset
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 292 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 451 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 278 bp overlap
SOX6 1 dataset
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 69 bp overlap
SS18 2 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 452 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 302 bp overlap
TAL1 2 datasets
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 144 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 145 bp overlap
TBX2 1 dataset
ChIP HepG2 ENCFF811TLA 157 bp overlap
TCF7L2 2 datasets
ChIP Hep-G2 ENCSR346BOD.TCF7L2.Hep-G2 71 bp overlap
ChIP HepG2 ENCFF510OLG 96 bp overlap
U2AF1 1 dataset
ChIP Hep-G2 GSE120104.U2AF1.Hep-G2 62 bp overlap
UBTF 1 dataset
ChIP HepG2 ENCFF424RNN 62 bp overlap
ZBTB7B 1 dataset
ChIP Hep-G2 ENCSR322ULL.ZBTB7B.Hep-G2 119 bp overlap
ZFHX3 1 dataset
ChIP HepG2 ENCFF082SJV 249 bp overlap
ZGPAT 1 dataset
ChIP HepG2 ENCFF055YSO 156 bp overlap
ZMYM2 1 dataset
ChIP HepG2 ENCFF575OMW 118 bp overlap
ZMYM3 1 dataset
ChIP HepG2 ENCFF408KTI 87 bp overlap
ZMYM4 1 dataset
ChIP HepG2 ENCFF567SQY 164 bp overlap
ZNF217 3 datasets
ChIP Hep-G2 ENCSR055FQB.ZNF217.Hep-G2 113 bp overlap
ChIP HepG2 ENCFF455XGO 113 bp overlap
ChIP HepG2 ENCFF455XGO 73 bp overlap
ZNF280D 1 dataset
ChIP HepG2 ENCFF203BIA 122 bp overlap
ZNF333 1 dataset
ChIP HepG2 ENCFF038JAL 236 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 171 bp overlap
ZNF44 2 datasets
ChIP HepG2 ENCFF984YCN 60 bp overlap
ChIP HepG2 ENCFF984YCN 269 bp overlap
ZNF558 1 dataset
ChIP HepG2 ENCFF210VCS 66 bp overlap
ZNF652 2 datasets
ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 439 bp overlap
ChIP HepG2 ENCFF331VPZ 83 bp overlap
ZNF708 1 dataset
Motif DE_72h DE_72h-ZNF708_MA1730.2 9 bp overlap
ZNF770 1 dataset
ChIP HepG2 ENCFF233UVH 239 bp overlap
ZNF883 1 dataset
ChIP Hep-G2 ENCSR882YYL.ZNF883.Hep-G2 155 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 151 bp overlap
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