chr19 : 12,555,453 12,555,714
261 bp 82 TFs 2 linked genes
This 261 bp open chromatin element is linked to ENSG00000196826 and ZNF564 and is bound by 82 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000196826 4.0 kb Proximal Proximity
ZNF564 4.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:12,550,453 – 12,560,714
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 236 bp overlap
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 129 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 107 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 261 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 217 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 248 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 194 bp overlap
BRD4 5 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 261 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 261 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 261 bp overlap
ChIP hESC GSE33281.BRD4.hESC 139 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 261 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 250 bp overlap
CDK6 1 dataset
ChIP KB GSE52469.CDK6.KB 110 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 122 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 193 bp overlap
CTCF 87 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 261 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 210 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 182 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 206 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 261 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 158 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 179 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 164 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 106 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 218 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 106 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP GM13977 ENCSR000DLB.CTCF.GM13977 137 bp overlap
ChIP GM23338 ENCFF531QOI 230 bp overlap
ChIP GM23338 ENCFF772DML 194 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 225 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 190 bp overlap
ChIP H9 ENCFF152GTF 261 bp overlap
ChIP HSPC-CD34 GSE107147.CTCF.HSPC-CD34 155 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 261 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 92 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 261 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 145 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.CTCF.K-562_dCas9-KRAB 191 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 167 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 165 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 228 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 228 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 191 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 150 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 143 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 239 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 184 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 173 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 185 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 207 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 118 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 220 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 261 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 261 bp overlap
ChIP delta-47 GSE70764.CTCF.delta-47 233 bp overlap
ChIP endodermal cell ENCFF471YCZ 260 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 127 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 164 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 165 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 217 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 261 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 187 bp overlap
ChIP gastroesophageal sphincter ENCFF607YRA 261 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 261 bp overlap
ChIP hESC GSE20650.CTCF.hESC 172 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 211 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 261 bp overlap
ChIP heart ENCSR778ZPK.CTCF.heart 261 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 247 bp overlap
ChIP heart left ventricle ENCFF354HOQ 261 bp overlap
ChIP heart left ventricle ENCFF548XHH 261 bp overlap
ChIP heart right ventricle ENCFF435TKW 261 bp overlap
ChIP heart right ventricle ENCFF577TID 261 bp overlap
ChIP heart right ventricle ENCFF767XJQ 261 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 222 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 233 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 239 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 194 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 193 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 160 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 152 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 197 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 222 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 245 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 258 bp overlap
ChIP islet ERP004003.CTCF.islet 259 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 261 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 113 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 261 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 186 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 159 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 261 bp overlap
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 261 bp overlap
ChIP spleen ENCSR343RJH.CTCF.spleen 222 bp overlap
ChIP testis ENCSR753RME.CTCF.testis 211 bp overlap
ChIP thyroid gland ENCFF300RYK 261 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 261 bp overlap
ChIP thyroid-gland ENCSR145HBC.CTCF.thyroid-gland 236 bp overlap
ChIP upper lobe of right lung ENCFF065JCM 261 bp overlap
CTCFL 2 datasets
ChIP K-562 GSE70764.CTCFL.K-562 247 bp overlap
ChIP delta-47 GSE70764.CTCFL.delta-47 191 bp overlap
E2F1 1 dataset
ChIP WTC11 ENCFF994SXO 226 bp overlap
E2F5 1 dataset
ChIP WTC11 ENCFF449LLF 261 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 261 bp overlap
ChIP H1 ENCFF785DWK 99 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 261 bp overlap
ELF1 2 datasets
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 149 bp overlap
ChIP ME-1 GSE46044.ELF1.ME-1 214 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 183 bp overlap
ERG 2 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 261 bp overlap
ChIP K-562 GSE23730.ERG.K-562 190 bp overlap
ESR1 4 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 234 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 253 bp overlap
ChIP MCF-7 GSE71276.ESR1.MCF-7 205 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 93 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 202 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 211 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 261 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 261 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 111 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 261 bp overlap
GTF2F1 2 datasets
ChIP K-562 ENCSR377BLZ.GTF2F1.K-562 261 bp overlap
ChIP K-562 GSE120104.GTF2F1.K-562 247 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 157 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 252 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 228 bp overlap
HMGXB4 1 dataset
ChIP WTC11 ENCFF962POR 261 bp overlap
JUND 2 datasets
ChIP WA01 ENCSR000BKP.JUND.WA01 173 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 155 bp overlap
KAT7 2 datasets
ChIP WTC11 ENCFF581TPB 261 bp overlap
ChIP WTC11 ENCFF581TPB 192 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 261 bp overlap
ChIP H1 ENCFF078LED 261 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 261 bp overlap
KDM5B 1 dataset
ChIP MCF-7 GSE46055.KDM5B.MCF-7 208 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 261 bp overlap
KMT2A 1 dataset
ChIP MOLM-13_VTP-d3-180110 GSE127507.KMT2A.MOLM-13_VTP-d3-180110 259 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 177 bp overlap
ChIP WTC11 ENCFF223QFY 261 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 190 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 95 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 261 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 126 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 261 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 261 bp overlap
NR3C1 1 dataset
ChIP breast_tumor_Male_1 GSE104399.NR3C1.breast_tumor_Male_1 202 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 261 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 261 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 261 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 261 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 199 bp overlap
POU5F1 4 datasets
ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 106 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 227 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 227 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 261 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 261 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF698EWO 148 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 240 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 261 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 192 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 150 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 261 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 216 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 239 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 261 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 261 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 182 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 261 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 140 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 187 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 261 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 261 bp overlap
STAG1 1 dataset
ChIP erythroid GSE67783.STAG1.erythroid 200 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 261 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 261 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 217 bp overlap
TBP 4 datasets
ChIP H1 ENCFF859IIO 237 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 261 bp overlap
ChIP hESC GSE122298.TBP.hESC 132 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 76 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 206 bp overlap
TP53 1 dataset
ChIP WTC11 ENCFF359JCU 261 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 239 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 258 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 261 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 53 bp overlap
USF2 1 dataset
ChIP K-562 GSE111469.USF2.K-562 256 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 261 bp overlap
YY1 2 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 224 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 261 bp overlap
ZBTB33 6 datasets
ChIP Hep-G2 ENCSR000BNA.ZBTB33.Hep-G2 121 bp overlap
ChIP HepG2 ENCFF778UKV 248 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 217 bp overlap
ChIP K562 ENCFF427SDV 207 bp overlap
ChIP K562 ENCFF875HLX 174 bp overlap
ChIP WTC11 ENCFF048CFR 261 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 87 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 221 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 261 bp overlap
ZNF232 1 dataset
ChIP WTC11 ENCFF901BGD 217 bp overlap
ZNF512 1 dataset
ChIP WTC11 ENCFF086TTM 250 bp overlap