chr16 : 77,789,340 – 77,790,175
835 bp 81 TFs 1 linked gene
This 835 bp open chromatin element is linked to VAT1L and is bound by 81 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
VAT1L 777 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:77,784,340 – 77,795,175
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
AFF1 3 datasets
ChIP SEM_CX4945 GSE90762.AFF1.SEM_CX4945 54 bp overlap
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 300 bp overlap
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 299 bp overlap
AR 2 datasets
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 216 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 292 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 143 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 178 bp overlap
BHLHE22 1 dataset
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 821 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 166 bp overlap
BRD4 5 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 100 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 190 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 835 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 222 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 331 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 286 bp overlap
CBX8 1 dataset
ChIP A-549 ENCSR616MOB.CBX8.A-549 177 bp overlap
CDK6 1 dataset
ChIP KB GSE52469.CDK6.KB 110 bp overlap
CDKN1B 1 dataset
ChIP MDA-BoM-1833_shp27 GSE112444.CDKN1B.MDA-BoM-1833_shp27 295 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 135 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 531 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 355 bp overlap
CTCF 2 datasets
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 136 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 344 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 215 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 117 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 172 bp overlap
EGR1 1 dataset
ChIP T-HESCs GSE141063.EGR1.T-HESCs 304 bp overlap
ERG 1 dataset
ChIP SEM GSE117864.ERG.SEM 424 bp overlap
EZH2 26 datasets
ChIP A673 ENCFF790MVL 110 bp overlap
ChIP A673 ENCFF790MVL 314 bp overlap
ChIP A673 ENCFF955JRZ 110 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 148 bp overlap
ChIP GM23338 ENCFF613YON 105 bp overlap
ChIP GM23338 ENCFF613YON 310 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 551 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 236 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 465 bp overlap
ChIP Karpas-422_CPI360-D4 GSE134136.EZH2.Karpas-422_CPI360-D4 356 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.EZH2.Karpas-422_CPI360-D8 412 bp overlap
ChIP Karpas-422_DMSO-D8 GSE134136.EZH2.Karpas-422_DMSO-D8 51 bp overlap
ChIP Pfeiffer GSE45982.EZH2.Pfeiffer 159 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 232 bp overlap
ChIP RL_CPI169-10d GSE134136.EZH2.RL_CPI169-10d 435 bp overlap
ChIP SK-N-MC ENCFF434OHW 288 bp overlap
ChIP SK-N-MC ENCFF674XUJ 288 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 64 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 662 bp overlap
ChIP T98G GSE112240.EZH2.T98G 277 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 435 bp overlap
ChIP astrocyte ENCFF365JTP 140 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 394 bp overlap
ChIP fibroblast of lung ENCFF479BAW 284 bp overlap
ChIP keratinocyte ENCFF070STK 115 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 214 bp overlap
EZH2_phosphoT487 2 datasets
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 274 bp overlap
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 51 bp overlap
GCM1 1 dataset
Motif DE_12h DE_12h-GCM1_MA0646.2 10 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 143 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 383 bp overlap
JARID2 3 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 210 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 69 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 335 bp overlap
KMT2A 1 dataset
ChIP MOLM-13_VTP-d3-180110 GSE127507.KMT2A.MOLM-13_VTP-d3-180110 291 bp overlap
MAF 1 dataset
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MAX 1 dataset
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 114 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 216 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 363 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 160 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 183 bp overlap
NFKB1 3 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 465 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 257 bp overlap
ChIP L1236 GSE63736.NFKB1.L1236 115 bp overlap
Neurod2 1 dataset
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
ONECUT2 2 datasets
ChIP A-549 GSE102599.ONECUT2.A-549 130 bp overlap
ChIP A-549 GSE102599.ONECUT2.A-549 594 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 172 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 243 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 259 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 271 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 227 bp overlap
ChIP islet ERP001456.PDX1.islet 188 bp overlap
POLR2A 1 dataset
ChIP thyroid gland ENCFF979LRR 413 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 427 bp overlap
RAD21 2 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 106 bp overlap
ChIP neural cell ENCFF564MOT 260 bp overlap
RBBP5 1 dataset
ChIP H1 ENCFF905HFL 108 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELA 1 dataset
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 150 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 321 bp overlap
RNF2 9 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 277 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 244 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 62 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 317 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 293 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 144 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 629 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 542 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 193 bp overlap
RORC 1 dataset
ChIP HCC70 GSE126380.RORC.HCC70 380 bp overlap
RUNX1T1 1 dataset
ChIP CD34 GSE80773.RUNX1T1.CD34 162 bp overlap
SAP30 2 datasets
ChIP WA01 ENCSR000ATR.SAP30.WA01 191 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 435 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 136 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 233 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 223 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 185 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 193 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 200 bp overlap
SMC1 2 datasets
ChIP HCAEC GSE101921.SMC1.HCAEC 140 bp overlap
ChIP IMR-90_OIS GSE118494.SMC1.IMR-90_OIS 147 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 218 bp overlap
SP1 1 dataset
ChIP HEK293 GSE76494.SP1.HEK293 244 bp overlap
SP2 1 dataset
ChIP HEK293 GSE76494.SP2.HEK293 147 bp overlap
SPI1 1 dataset
ChIP NB4 GSE128834.SPI1.NB4 234 bp overlap
STAT1 2 datasets
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT3 2 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
SUZ12 9 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 405 bp overlap
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 193 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 295 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 232 bp overlap
ChIP Karpas-422_CPI360-D4 GSE134136.SUZ12.Karpas-422_CPI360-D4 517 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 340 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 333 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 500 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 821 bp overlap
Stat4 2 datasets
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Stat5a 1 dataset
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Stat5a::Stat5b 2 datasets
Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap
Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap
Stat5b 2 datasets
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
TEAD4 1 dataset
ChIP ESC S26-ESC-d0-TEAD4-exp1 300 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 376 bp overlap
TFAP4 1 dataset
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 193 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 278 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 62 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 174 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
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