chr16 : 57,427,202 57,428,139
937 bp 105 TFs 7 linked genes
This 937 bp open chromatin element is linked to 7 target genes and is bound by 105 transcription factors.
Linked Genes
7 genes
Gene Expression Dist. to TSS Distance Link type
CIAPIN1 19.8 kb Distal Multiome
COQ9 19.9 kb Distal Multiome
POLR2C 35.0 kb Distal Multiome
CCDC102A 109.0 kb Distal Multiome
ARL2BP 182.4 kb Distal Multiome
RSPRY1 241.3 kb Distal Multiome
PSME3IP1 241.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:57,422,202 – 57,433,139
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
105 transcription factors
Source
Cell type
ARNT2 1 dataset
Motif DE_72h DE_72h-ARNT2_MA1464.2 8 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 116 bp overlap
Arnt 1 dataset
Motif DE_72h DE_72h-Arnt_MA0004.1 6 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CEBPA 1 dataset
ChIP HepG2 ENCFF175DFS 264 bp overlap
CEBPB 1 dataset
ChIP HeLa-S3 ENCFF722WEG 252 bp overlap
CLOCK 1 dataset
Motif DE_72h DE_72h-CLOCK_MA0819.3 7 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 208 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 285 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 361 bp overlap
CTCF 10 datasets
ChIP D721Med ENCFF513FYD 211 bp overlap
Motif DE_72h DE_72h-CTCF_MA0139.2 15 bp overlap
Motif DE_72h DE_72h-CTCF_MA1930.2 33 bp overlap
ChIP HepG2 ENCFF348BUL 150 bp overlap
ChIP HepG2 ENCFF757EKU 249 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 141 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 109 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 121 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 107 bp overlap
ChIP retina_AB1-RB GSE86981.CTCF.retina_AB1-RB 176 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 589 bp overlap
Crx 2 datasets
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
DUX4 4 datasets
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
ChIP HEK293 GSE75791.DUX4.HEK293 340 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 391 bp overlap
DUXA 1 dataset
Motif DE_72h DE_72h-DUXA_MA0884.2 13 bp overlap
Dmbx1 1 dataset
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
E2F1 1 dataset
ChIP HeLa GSE22478.E2F1.HeLa 161 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 256 bp overlap
ChIP hESC GSE26097.EOMES.hESC 305 bp overlap
FOS 2 datasets
Motif DE_72h DE_72h-FOS_MA0476.2 8 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 128 bp overlap
FOSL2 3 datasets
ChIP A-549 ENCSR448TVS.FOSL2.A-549 185 bp overlap
Motif DE_72h DE_72h-FOSL2_MA0478.2 10 bp overlap
ChIP HepG2 ENCFF548CXY 139 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 242 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 805 bp overlap
ChIP DE DE-FOXA2-2 913 bp overlap
ChIP HepG2 ENCFF533COJ 175 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 170 bp overlap
GABPB1 1 dataset
ChIP WTC11 ENCFF166QKI 334 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 248 bp overlap
ChIP DE DE-GATA4-1 880 bp overlap
ChIP DE DE-GATA4-2 937 bp overlap
ChIP foregut GSE117136.GATA4.foregut 133 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 378 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 384 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 934 bp overlap
ChIP DE DE-GATA6-2 937 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 561 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 511 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 557 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 604 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 853 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 538 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 303 bp overlap
ChIP foregut GSE117136.GATA6.foregut 177 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 392 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 262 bp overlap
GSC 2 datasets
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Gfi1B 1 dataset
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
HES1 1 dataset
Motif DE_72h DE_72h-HES1_MA1099.3 8 bp overlap
HES5 1 dataset
Motif DE_72h DE_72h-HES5_MA0821.2 10 bp overlap
HES6 1 dataset
Motif DE_72h DE_72h-HES6_MA1493.1 10 bp overlap
HEY1 1 dataset
Motif DE_72h DE_72h-HEY1_MA0823.1 10 bp overlap
HEY2 1 dataset
Motif DE_72h DE_72h-HEY2_MA0649.2 9 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 135 bp overlap
ChIP HepG2 ENCFF854JLR 231 bp overlap
IKZF2 1 dataset
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 332 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 132 bp overlap
JUND 1 dataset
ChIP HepG2 ENCFF869OPW 231 bp overlap
Jun 1 dataset
Motif DE_72h DE_72h-Jun_MA0489.3 8 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 245 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 314 bp overlap
MAX 1 dataset
Motif DE_72h DE_72h-MAX_MA0058.4 6 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MLXIPL 1 dataset
Motif DE_72h DE_72h-MLXIPL_MA0664.2 8 bp overlap
MNT 1 dataset
Motif DE_72h DE_72h-MNT_MA0825.2 6 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 300 bp overlap
MYC 1 dataset
Motif DE_72h DE_72h-MYC_MA0147.4 8 bp overlap
MYCN 1 dataset
Motif DE_72h DE_72h-MYCN_MA0104.5 8 bp overlap
MZF1 3 datasets
Motif DE_72h DE_72h-MZF1_MA0056.3 8 bp overlap
Motif DE_72h DE_72h-MZF1_MA0056.3 8 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 350 bp overlap
Mlxip 1 dataset
Motif DE_72h DE_72h-Mlxip_MA0622.2 6 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 221 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 361 bp overlap
ChIP D283-Med GSE92582.NEUROD1.D283-Med 345 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 181 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 342 bp overlap
Npas2 1 dataset
Motif DE_72h DE_72h-Npas2_MA0626.2 8 bp overlap
OTX1 2 datasets
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 3 datasets
Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap
Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 284 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 241 bp overlap
PITX1 2 datasets
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
PML 1 dataset
ChIP GM12878 ENCSR000BQM.PML.GM12878 175 bp overlap
POLR2A 3 datasets
ChIP GM12891 ENCFF127ICP 424 bp overlap
ChIP GM12891 ENCFF127ICP 511 bp overlap
ChIP K562 ENCFF215CWW 227 bp overlap
PRDM9 1 dataset
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
RAD21 1 dataset
ChIP HepG2 ENCFF906QIS 214 bp overlap
RBM22 2 datasets
ChIP HepG2 ENCFF292RVQ 359 bp overlap
ChIP HepG2 ENCFF561IAJ 347 bp overlap
RELA 2 datasets
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 154 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 158 bp overlap
RHOXF1 2 datasets
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 253 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 326 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 286 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 497 bp overlap
SMAD3 1 dataset
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 172 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 290 bp overlap
SMARCC1 1 dataset
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 311 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 409 bp overlap
SP4 1 dataset
Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 263 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 331 bp overlap
SPIB 1 dataset
Motif DE_72h DE_72h-SPIB_MA0081.3 13 bp overlap
STAG1 2 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 174 bp overlap
ChIP HepG2 ENCFF843EBZ 257 bp overlap
SUPT5H 4 datasets
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 269 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 215 bp overlap
ChIP K562 ENCFF902PAW 163 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 53 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 340 bp overlap
Spi1 1 dataset
Motif DE_72h DE_72h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 296 bp overlap
TBX2 1 dataset
Motif DE_72h DE_72h-TBX2_MA0688.2 9 bp overlap
TBX3 1 dataset
Motif DE_72h DE_72h-TBX3_MA1566.3 9 bp overlap
THRB 1 dataset
Motif DE_72h DE_72h-THRB_MA1575.2 17 bp overlap
TP53 1 dataset
ChIP IMR-90_SENES_SHLUC GSE42728.TP53.IMR-90_SENES_SHLUC 128 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 222 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 109 bp overlap
ZIC1 1 dataset
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZNF140 1 dataset
Motif DE_72h DE_72h-ZNF140_MA1589.2 19 bp overlap
ZNF148 1 dataset
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF189 1 dataset
Motif DE_72h DE_72h-ZNF189_MA1725.2 9 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 232 bp overlap
ZNF263 1 dataset
Motif DE_72h DE_72h-ZNF263_MA0528.3 7 bp overlap
ZNF274 1 dataset
Motif DE_72h DE_72h-ZNF274_MA1592.2 12 bp overlap
ZNF331 1 dataset
Motif DE_72h DE_72h-ZNF331_MA1726.2 10 bp overlap
ZNF341 1 dataset
Motif DE_72h DE_72h-ZNF341_MA1655.2 8 bp overlap
ZNF677 1 dataset
Motif DE_72h DE_72h-ZNF677_MA2101.1 12 bp overlap
ZNF701 1 dataset
Motif DE_72h DE_72h-ZNF701_MA1987.2 17 bp overlap
ZNF816 1 dataset
Motif DE_72h DE_72h-ZNF816_MA1719.2 15 bp overlap