chr15 : 23,647,560 23,648,232
672 bp 88 TFs 1 linked gene
This 672 bp open chromatin element is linked to MAGEL2 and is bound by 88 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
MAGEL2 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:23,642,560 – 23,653,232
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 114 bp overlap
ARNT 1 dataset
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 147 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 641 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 430 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 472 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 389 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 195 bp overlap
BRD4 14 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 207 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 244 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 263 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 544 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 396 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 394 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 198 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 198 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 580 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 356 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 589 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 284 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 204 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 293 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 110 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 174 bp overlap
CHD1 2 datasets
ChIP H1 ENCFF128BID 362 bp overlap
ChIP WA01 ENCSR000EBU.CHD1.WA01 252 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 235 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 136 bp overlap
CTCF 7 datasets
ChIP HT-1080 GSE135580.CTCF.HT-1080 145 bp overlap
ChIP T-47D_D538G GSE148277.CTCF.T-47D_D538G 267 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 281 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 302 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 228 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 305 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 614 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 287 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 251 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 242 bp overlap
EGR1 2 datasets
ChIP A-375 GSE116190.EGR1.A-375 104 bp overlap
ChIP H1 ENCFF451BLH 261 bp overlap
EP300 4 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 331 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 550 bp overlap
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 550 bp overlap
ERG 7 datasets
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 157 bp overlap
ChIP SEM GSE117864.ERG.SEM 443 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 415 bp overlap
ChIP VCaP GSE83650.ERG.VCaP 193 bp overlap
ChIP VCaP GSE98809.ERG.VCaP 193 bp overlap
ChIP VCaP_DHAT_18H GSE28950.ERG.VCaP_DHAT_18H 232 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 270 bp overlap
ESR1 1 dataset
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 243 bp overlap
ETS1 5 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 672 bp overlap
ChIP cardiomyocyte_D14 GSE129986.ETS1.cardiomyocyte_D14 672 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 582 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 672 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 144 bp overlap
EZH2 7 datasets
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 672 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 195 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 385 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 317 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 574 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 263 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 196 bp overlap
FLI1 1 dataset
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 166 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 211 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 99 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 179 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 151 bp overlap
JUND 2 datasets
ChIP H1 ENCFF010YXS 311 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 295 bp overlap
KDM4A 4 datasets
ChIP H1 ENCFF078LED 289 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 476 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 120 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 242 bp overlap
KMT2A 2 datasets
ChIP MOLM-13 GSE114981.KMT2A.MOLM-13 287 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 334 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 265 bp overlap
MAZ 1 dataset
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 108 bp overlap
MED26 1 dataset
ChIP U2OS_SHEP400 GSE73742.MED26.U2OS_SHEP400 309 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 512 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 672 bp overlap
MYC-DAXX 1 dataset
ChIP HEK293_GAL4-DBD GSE107348.MYC-DAXX.HEK293_GAL4-DBD 222 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 272 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 96 bp overlap
MYOD1 5 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 286 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 306 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 212 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 266 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 192 bp overlap
MYOG 1 dataset
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 176 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 92 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 327 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 265 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 55 bp overlap
NFKBIA 1 dataset
ChIP dermal GSE30082.NFKBIA.dermal 334 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 237 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 205 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 280 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 274 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 211 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 170 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 145 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 186 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2018006 GSE129039.OLIG2.brain-prefrontal-cortex_2018006 101 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 622 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 251 bp overlap
PHF8 2 datasets
ChIP H1 ENCFF427UFV 506 bp overlap
ChIP WA01 ENCSR000ATK.PHF8.WA01 170 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 78 bp overlap
POLR2A 7 datasets
ChIP GM23338 ENCFF450WCS 246 bp overlap
ChIP body of pancreas ENCFF501FEC 575 bp overlap
ChIP body of pancreas ENCFF675RCN 560 bp overlap
ChIP neural cell ENCFF604SPB 281 bp overlap
ChIP thyroid gland ENCFF979LRR 443 bp overlap
ChIP vagina ENCFF384GAB 359 bp overlap
ChIP vagina ENCFF384GAB 510 bp overlap
POU5F1 5 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 670 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 383 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 672 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 197 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 398 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 467 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 592 bp overlap
RAD21 2 datasets
ChIP RH4 GSE83726.RAD21.RH4 398 bp overlap
ChIP neural cell ENCFF564MOT 201 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 598 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 428 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 405 bp overlap
ChIP neural cell ENCFF882LXX 225 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 245 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 345 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE76181.RUNX1.Jurkat 235 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 173 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 495 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 303 bp overlap
SIN3A 5 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 446 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 172 bp overlap
ChIP hiPSC_IA12 GSE106870.SIN3A.hiPSC_IA12 162 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 394 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 377 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 253 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 302 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 310 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 144 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 55 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 63 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 56 bp overlap
SUZ12 4 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 595 bp overlap
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 218 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 292 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 216 bp overlap
TAF1 6 datasets
ChIP H1 ENCFF478SZO 238 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 267 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 321 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 170 bp overlap
ChIP neural cell ENCFF468SPD 283 bp overlap
ChIP neural cell ENCFF468SPD 424 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 337 bp overlap
TBP 6 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 343 bp overlap
ChIP hESC GSE122298.TBP.hESC 133 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 387 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 178 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 113 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 292 bp overlap
TCF7 1 dataset
ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 89 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 272 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 106 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 102 bp overlap
TRIM28 3 datasets
ChIP AF22 GSE84259.TRIM28.AF22 374 bp overlap
ChIP HCT-116 GSE72622.TRIM28.HCT-116 97 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 174 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 300 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 402 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 147 bp overlap