chr1 : 223,017,702 223,020,291
2,589 bp 100 TFs 0 linked genes
This 2.6 kb open chromatin element has no linked target genes and is bound by 100 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:223,012,702 – 223,025,291
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
AR 1 dataset
ChIP WTC11 ENCFF267GQJ 317 bp overlap
ATF1 2 datasets
ChIP WTC11 ENCFF354DFT 451 bp overlap
ChIP WTC11 ENCFF354DFT 451 bp overlap
ATF2 4 datasets
ChIP WA01 ENCSR000BQU.ATF2.WA01 261 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 254 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 136 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 65 bp overlap
Bcl11B 1 dataset
Motif ES_0h ES_0h-Bcl11B_MA1989.2 9 bp overlap
CEBPA 1 dataset
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 102 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 255 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 173 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 168 bp overlap
CREB1 2 datasets
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 236 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 136 bp overlap
CTBP1 1 dataset
ChIP MCF-7 ENCSR636EYA.CTBP1.MCF-7 243 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF364PUR 251 bp overlap
ChIP BLaER1 ENCFF844FIP 220 bp overlap
E2F6 4 datasets
Motif ES_0h ES_0h-E2F6_MA0471.3 8 bp overlap
Motif ES_0h ES_0h-E2F6_MA0471.3 8 bp overlap
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 742 bp overlap
E2F7 1 dataset
Motif ES_0h ES_0h-E2F7_MA0758.1 14 bp overlap
E2F8 1 dataset
Motif ES_0h ES_0h-E2F8_MA0865.3 9 bp overlap
EMX1 1 dataset
ChIP WTC11 ENCFF692RZJ 605 bp overlap
ERG 1 dataset
ChIP WTC11 ENCFF011YUL 281 bp overlap
ESR1 5 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 227 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 227 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 364 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 258 bp overlap
ChIP breast_mrnahist ERP002305.ESR1.breast_mrnahist 123 bp overlap
ESRRA 2 datasets
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 311 bp overlap
ChIP WTC11 ENCFF591YCA 425 bp overlap
ESRRB 1 dataset
Motif ES_0h ES_0h-ESRRB_MA0141.4 10 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 395 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 216 bp overlap
FOXA1 1 dataset
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 253 bp overlap
FOXJ3 1 dataset
ChIP WTC11 ENCFF909BTK 167 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 434 bp overlap
ChIP DE DE-GATA4-2 625 bp overlap
GATA6 13 datasets
ChIP AGS GSE51705.GATA6.AGS 261 bp overlap
ChIP DE DE-GATA6-1 470 bp overlap
ChIP DE DE-GATA6-2 579 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 535 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 745 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 692 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 503 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 721 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 749 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 499 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 393 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 491 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 279 bp overlap
GFI1 1 dataset
Motif ES_0h ES_0h-GFI1_MA0038.3 11 bp overlap
GLIS3 1 dataset
Motif ES_0h ES_0h-GLIS3_MA0737.1 14 bp overlap
GRHL2 4 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 189 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 334 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 263 bp overlap
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 136 bp overlap
Gfi1B 1 dataset
Motif ES_0h ES_0h-Gfi1B_MA0483.2 10 bp overlap
HAND2 1 dataset
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 399 bp overlap
HDAC6 1 dataset
ChIP WA01 ENCSR000ATQ.HDAC6.WA01 107 bp overlap
HIC2 1 dataset
Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap
HNF4A 1 dataset
Motif ES_0h ES_0h-HNF4A_MA1494.2 14 bp overlap
Hand1 1 dataset
Motif ES_0h ES_0h-Hand1_MA2123.1 9 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 209 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 372 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 94 bp overlap
KLF4 1 dataset
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP H1 ENCFF914VQY 357 bp overlap
MEIS2 1 dataset
Motif ES_0h ES_0h-MEIS2_MA1640.2 9 bp overlap
MNT 1 dataset
ChIP Hep-G2 ENCSR261EDU.MNT.Hep-G2 240 bp overlap
MZF1 1 dataset
Motif ES_0h ES_0h-MZF1_MA0056.3 8 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 233 bp overlap
NFAT5 1 dataset
ChIP Hep-G2 ENCSR565BVI.NFAT5.Hep-G2 204 bp overlap
NFATC4 1 dataset
ChIP WTC11 ENCFF744MZI 271 bp overlap
NFIA 1 dataset
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif ES_0h ES_0h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
NIPBL 1 dataset
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 238 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 120 bp overlap
Nr2e3 1 dataset
Motif ES_0h ES_0h-Nr2e3_MA0164.2 6 bp overlap
ONECUT2 1 dataset
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 170 bp overlap
PBX2 1 dataset
Motif ES_0h ES_0h-PBX2_MA1113.3 9 bp overlap
POLR2A 11 datasets
ChIP GM23338 ENCFF450WCS 2442 bp overlap
ChIP H1 ENCFF566JSR 557 bp overlap
ChIP H1 ENCFF566JSR 315 bp overlap
ChIP H1 ENCFF566JSR 631 bp overlap
ChIP H1 ENCFF770YBQ 471 bp overlap
ChIP H1 ENCFF770YBQ 471 bp overlap
ChIP H1 ENCFF833NJP 845 bp overlap
ChIP H1 ENCFF833NJP 211 bp overlap
ChIP H1 ENCFF833NJP 219 bp overlap
ChIP H1 ENCFF833NJP 154 bp overlap
ChIP upper lobe of left lung ENCFF095BJW 54 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 317 bp overlap
PPARG 1 dataset
Motif ES_0h ES_0h-PPARG_MA0066.2 19 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 226 bp overlap
PRRX2 1 dataset
ChIP WTC11 ENCFF107JGJ 301 bp overlap
RELA 1 dataset
ChIP HUVEC-C_TNF_JQ1 GSE53998.RELA.HUVEC-C_TNF_JQ1 54 bp overlap
REST 2 datasets
ChIP GM23338 ENCFF024TCL 265 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 176 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 237 bp overlap
Runx1 1 dataset
Motif ES_0h ES_0h-Runx1_MA0002.3 9 bp overlap
SIRT6 1 dataset
ChIP WA01 ENCSR000AUS.SIRT6.WA01 160 bp overlap
SIX1 1 dataset
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
SMAD2 2 datasets
Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap
Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 269 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 421 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 412 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 442 bp overlap
SP4 1 dataset
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SPI1 1 dataset
ChIP K-562 ENCSR000BGW.SPI1.K-562 100 bp overlap
STAT3 10 datasets
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 247 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 345 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 435 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 368 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 257 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 195 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 264 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 317 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 386 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 287 bp overlap
Six3 1 dataset
Motif ES_0h ES_0h-Six3_MA0631.2 11 bp overlap
Six4 1 dataset
Motif ES_0h ES_0h-Six4_MA2001.2 7 bp overlap
Spz1 1 dataset
Motif ES_0h ES_0h-Spz1_MA0111.1 11 bp overlap
TEAD1 1 dataset
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
TEAD3 1 dataset
Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap
TEAD4 2 datasets
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 208 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 367 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 466 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 201 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 171 bp overlap
ZBTB26 1 dataset
Motif ES_0h ES_0h-ZBTB26_MA1579.2 8 bp overlap
ZFP14 1 dataset
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF184 2 datasets
ChIP WTC11 ENCFF352POG 497 bp overlap
ChIP WTC11 ENCFF352POG 497 bp overlap
ZNF263 2 datasets
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ChIP K-562 ENCSR000EWN.ZNF263.K-562 276 bp overlap
ZNF281 1 dataset
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF425 3 datasets
ChIP WTC11 ENCFF359IXT 301 bp overlap
ChIP WTC11 ENCFF359IXT 301 bp overlap
ChIP WTC11 ENCFF359IXT 301 bp overlap
ZNF671 1 dataset
ChIP WTC11 ENCFF053HBV 265 bp overlap
Zfp335 1 dataset
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap