chr1 : 218,499,639 – 218,500,368
729 bp 112 TFs 1 linked gene
This 729 bp open chromatin element is linked to LINC02869 and is bound by 112 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02869 4.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:218,494,639 – 218,505,368
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
112 transcription factors
Source
Cell type
ARNT::HIF1A 1 dataset
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_24h DE_24h-AhrArnt_MA0006.2 5 bp overlap
BRD2 1 dataset
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 53 bp overlap
BRD4 6 datasets
ChIP HCC1806_DMSO_24h GSE87418.BRD4.HCC1806_DMSO_24h 142 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 72 bp overlap
ChIP LPS141 GSE111253.BRD4.LPS141 255 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 118 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 101 bp overlap
ChIP SUM149_DMSO GSE63581.BRD4.SUM149_DMSO 108 bp overlap
CREBBP 2 datasets
ChIP PC-3 GSE147455.CREBBP.PC-3 167 bp overlap
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 163 bp overlap
CTCF 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 218 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 260 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 234 bp overlap
ESR1 1 dataset
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 61 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FOSL2 5 datasets
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
Motif DE_24h DE_24h-FOSL2_MA0478.2 10 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 207 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 222 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 69 bp overlap
FOXA1 1 dataset
ChIP PDAC GSE64557.FOXA1.PDAC 119 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 264 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD2 2 datasets
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXG1 1 dataset
Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap
FOXH1 1 dataset
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
FOXL2 2 datasets
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 86 bp overlap
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 77 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 544 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-2 560 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 308 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 125 bp overlap
HIC2 3 datasets
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
Motif DE_24h DE_24h-HIC2_MA0738.2 6 bp overlap
Motif DE_36h DE_36h-HIC2_MA0738.2 6 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 74 bp overlap
HOXB13 1 dataset
ChIP A549 ENCFF870NOA 178 bp overlap
HOXC13 1 dataset
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Hand1::Tcf3 1 dataset
Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 284 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 506 bp overlap
KMT2A 1 dataset
ChIP THP-1 GSE79899.KMT2A.THP-1 170 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 82 bp overlap
MED1 2 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 290 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 282 bp overlap
MEF2B 1 dataset
Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 119 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 332 bp overlap
Msgn1 1 dataset
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 330 bp overlap
NFE2L2 1 dataset
ChIP BEAS-2B_arsenic GSE145834.NFE2L2.BEAS-2B_arsenic 114 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 80 bp overlap
NFKB1 1 dataset
Motif DE_12h DE_12h-NFKB1_MA0105.4 13 bp overlap
NFKB2 1 dataset
Motif DE_12h DE_12h-NFKB2_MA0778.2 11 bp overlap
NR2F2 1 dataset
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 172 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_shNR3C1_TNF-DEX_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF-DEX_IA1 119 bp overlap
ONECUT2 1 dataset
ChIP A-549 GSE102599.ONECUT2.A-549 141 bp overlap
ONECUT3 1 dataset
Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 426 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 112 bp overlap
PHOX2B 1 dataset
Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 368 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
PRDM9 3 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
PROP1 1 dataset
Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap
Prdm14 1 dataset
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
RAD21 1 dataset
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 58 bp overlap
RBPJ 2 datasets
ChIP HCC1599 GSE116871.RBPJ.HCC1599 152 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 172 bp overlap
RELA 6 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 61 bp overlap
ChIP Detroit-562_Pam2CSK4 GSE91018.RELA.Detroit-562_Pam2CSK4 85 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 142 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 65 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 69 bp overlap
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 179 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 696 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 719 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 693 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 623 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 649 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 483 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 677 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 508 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 162 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 142 bp overlap
SMARCA2 3 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 355 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 74 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 179 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 203 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 262 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 165 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 179 bp overlap
SP5 3 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SREBF1 2 datasets
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
Motif DE_24h DE_24h-SREBF1_MA0829.3 10 bp overlap
SREBF2 2 datasets
Motif DE_12h DE_12h-SREBF2_MA0828.3 10 bp overlap
Motif DE_24h DE_24h-SREBF2_MA0828.3 10 bp overlap
SS18 1 dataset
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 168 bp overlap
STAT3 2 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 78 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 210 bp overlap
SUPT5H 3 datasets
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 156 bp overlap
ChIP U2OS_DMSO GSE115365.SUPT5H.U2OS_DMSO 141 bp overlap
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 78 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 234 bp overlap
TCF7L2 1 dataset
ChIP LNCaP GSE51621.TCF7L2.LNCaP 57 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 127 bp overlap
THRA 2 datasets
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
Motif DE_24h DE_24h-THRA_MA1969.2 18 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
VEZF1 2 datasets
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
Motif DE_24h DE_24h-VEZF1_MA1578.2 6 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZBTB12 1 dataset
Motif DE_12h DE_12h-ZBTB12_MA1649.2 7 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZFP14 2 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF136 1 dataset
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF257 2 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF354C 1 dataset
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
ZNF384 1 dataset
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF573 1 dataset
ChIP HEK293T GSE78099.ZNF573.HEK293T 62 bp overlap
ZNF707 2 datasets
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
ZNF770 3 datasets
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Motif DE_36h DE_36h-ZNF770_MA2099.1 8 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
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