chr13 : 49,999,046 49,999,357
311 bp 125 TFs 2 linked genes
This 311 bp open chromatin element is linked to TRIM13 and MIR3613 and is bound by 125 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
TRIM13 2.0 kb Proximal Proximity
MIR3613 2.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:49,994,046 – 50,004,357
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
125 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 273 bp overlap
ASCL1 2 datasets
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Motif DE_24h DE_24h-ASCL1_MA1631.2 9 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 82 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 311 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 303 bp overlap
BARX2 2 datasets
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
Motif DE_24h DE_24h-BARX2_MA1471.2 9 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 157 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 149 bp overlap
BRD3 1 dataset
ChIP THP-1_DMSO-PMA GSE138084.BRD3.THP-1_DMSO-PMA 311 bp overlap
BRD4 6 datasets
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 269 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 126 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 190 bp overlap
ChIP THP-1_iBET-BD1-PMA GSE138084.BRD4.THP-1_iBET-BD1-PMA 175 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 311 bp overlap
ChIP THP-1_iBET-BD2-PMA GSE138084.BRD4.THP-1_iBET-BD2-PMA 130 bp overlap
CEBPD 2 datasets
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
Motif DE_24h DE_24h-CEBPD_MA0836.3 8 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 90 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 311 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 118 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 248 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 120 bp overlap
EBF1 4 datasets
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
ChIP GM12878 ENCFF167CZS 230 bp overlap
ChIP GM12878 ENCFF813OXE 175 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 195 bp overlap
EBF3 1 dataset
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
EGR1 2 datasets
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
Motif DE_24h DE_24h-EGR1_MA0162.5 10 bp overlap
EGR2 2 datasets
Motif DE_12h DE_12h-EGR2_MA0472.2 11 bp overlap
Motif DE_24h DE_24h-EGR2_MA0472.2 11 bp overlap
EGR3 2 datasets
Motif DE_12h DE_12h-EGR3_MA0732.2 11 bp overlap
Motif DE_24h DE_24h-EGR3_MA0732.2 11 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 160 bp overlap
ERF::FIGLA 2 datasets
Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap
Motif DE_24h DE_24h-ERFFIGLA_MA1934.2 13 bp overlap
ESR1 1 dataset
Motif DE_12h DE_12h-ESR1_MA0112.4 15 bp overlap
ETV2::FIGLA 2 datasets
Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap
Motif DE_24h DE_24h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV5::FIGLA 2 datasets
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_24h DE_24h-ETV5FIGLA_MA1945.2 14 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FIGLA 3 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap
FOSL1 1 dataset
Motif DE_12h DE_12h-FOSL1_MA0477.3 9 bp overlap
FOSL2 1 dataset
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 136 bp overlap
GRHL2 4 datasets
ChIP HBE GSE46194.GRHL2.HBE 235 bp overlap
ChIP LNCaP GSE80256.GRHL2.LNCaP 112 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 212 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 209 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF353UJQ 254 bp overlap
ChIP H1 ENCFF939VKA 198 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 119 bp overlap
HLF 2 datasets
Motif DE_12h DE_12h-HLF_MA0043.4 9 bp overlap
Motif DE_24h DE_24h-HLF_MA0043.4 9 bp overlap
HNF1A 1 dataset
Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap
HNF1B 2 datasets
Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 245 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 198 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
JUNB 1 dataset
Motif DE_12h DE_12h-JUNB_MA0490.3 9 bp overlap
JUND 1 dataset
Motif DE_12h DE_12h-JUND_MA0491.3 9 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
KLF3 1 dataset
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
KMT2A 1 dataset
ChIP MV4-11 GSE83671.KMT2A.MV4-11 191 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 193 bp overlap
MEIS1 4 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 226 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 311 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 169 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 134 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 279 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 206 bp overlap
NFIL3 2 datasets
Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap
Motif DE_24h DE_24h-NFIL3_MA0025.3 9 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 301 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 132 bp overlap
Nfat5 2 datasets
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 175 bp overlap
POLR2A 4 datasets
ChIP GM12878 ENCFF412KAE 231 bp overlap
ChIP GM23338 ENCFF450WCS 311 bp overlap
ChIP H1 ENCFF770YBQ 244 bp overlap
ChIP H1 ENCFF770YBQ 311 bp overlap
POU1F1 4 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif DE_24h DE_24h-POU1F1_MA0784.3 14 bp overlap
POU2F1 4 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif DE_24h DE_24h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_24h DE_24h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 6 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif DE_24h DE_24h-POU2F2_MA0507.3 13 bp overlap
ChIP GM12878 ENCFF207RKY 285 bp overlap
ChIP GM12891 ENCSR000BII.POU2F2.GM12891 164 bp overlap
POU2F3 5 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif DE_24h DE_24h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 219 bp overlap
POU3F1 4 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif DE_24h DE_24h-POU3F1_MA0786.2 10 bp overlap
POU3F2 4 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif DE_24h DE_24h-POU3F2_MA0787.1 12 bp overlap
POU3F3 3 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif DE_24h DE_24h-POU3F3_MA0788.1 13 bp overlap
POU3F4 4 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif DE_24h DE_24h-POU3F4_MA0789.1 9 bp overlap
POU4F1 1 dataset
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
POU4F3 1 dataset
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
POU5F1 16 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif DE_24h DE_24h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 311 bp overlap
ChIP GM23338 ENCFF333SNB 301 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 311 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 311 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 311 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 187 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 188 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 238 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 311 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 311 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 173 bp overlap
POU5F1B 4 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_24h DE_24h-POU5F1B_MA0792.1 9 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 310 bp overlap
Pax7 1 dataset
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_24h DE_24h-Pou5f1Sox2_MA0142.1 15 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_24h DE_24h-Ptf1A_MA1620.2 8 bp overlap
RARA 3 datasets
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
Motif DE_24h DE_24h-RARA_MA0729.1 18 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 67 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 311 bp overlap
RBFOX2 3 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 195 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 195 bp overlap
ChIP K562 ENCFF196WTG 311 bp overlap
SIN3A 2 datasets
ChIP H1 ENCFF896IJG 228 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 66 bp overlap
SMAD3 1 dataset
ChIP hESC GSE29422.SMAD3.hESC 160 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 140 bp overlap
SMARCA4 3 datasets
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 135 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 311 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 311 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 311 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 163 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 311 bp overlap
SNAI1 2 datasets
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
Motif DE_24h DE_24h-SNAI1_MA1558.2 7 bp overlap
SNAI3 2 datasets
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
Motif DE_24h DE_24h-SNAI3_MA1559.2 9 bp overlap
SOX2 4 datasets
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 217 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 311 bp overlap
ChIP hESC GSE18292.SOX2.hESC 96 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 311 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 264 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 311 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 122 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SUPT5H 2 datasets
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 248 bp overlap
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 265 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 311 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 292 bp overlap
TBP 2 datasets
ChIP hESC GSE122298.TBP.hESC 124 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 176 bp overlap
TBX1 1 dataset
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TCF12 4 datasets
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
Motif DE_24h DE_24h-TCF12_MA1648.2 7 bp overlap
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 266 bp overlap
TCF3 3 datasets
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
Motif DE_24h DE_24h-TCF3_MA0522.4 7 bp overlap
ChIP NPC GSE154479.TCF3.NPC 272 bp overlap
TCF4 2 datasets
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
Motif DE_24h DE_24h-TCF4_MA0830.3 8 bp overlap
TFAP4::ETV1 2 datasets
Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap
Motif DE_24h DE_24h-TFAP4ETV1_MA1966.2 13 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
YY1 6 datasets
ChIP GM12878 ENCFF908JTL 311 bp overlap
ChIP GM12891 ENCSR000BKJ.YY1.GM12891 218 bp overlap
ChIP GM12892 ENCFF802MHJ 299 bp overlap
ChIP GM12892 ENCSR000BLT.YY1.GM12892 286 bp overlap
ChIP H1 ENCFF524BTL 244 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 276 bp overlap
YY2 1 dataset
Motif DE_12h DE_12h-YY2_MA0748.3 7 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZEB1 5 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 311 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 117 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF384 2 datasets
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
Motif DE_24h DE_24h-ZNF384_MA1125.2 8 bp overlap
ZNF547 2 datasets
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
Motif DE_24h DE_24h-ZNF547_MA2334.1 13 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF692 1 dataset
Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap