chr13 : 45,331,176 – 45,331,542
366 bp 117 TFs 3 linked genes
This 366 bp open chromatin element is linked to TPT1, ENSG00000273149, and TPT1-AS1 and is bound by 117 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TPT1 8.0 kb Proximal Proximity
ENSG00000273149 8.5 kb Proximal Proximity
TPT1-AS1 9.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:45,326,176 – 45,336,542
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
117 transcription factors
Source
Cell type
AGO1 3 datasets
ChIP K-562 GSE120104.AGO1.K-562 142 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 180 bp overlap
ChIP K-562 GSE120104.AGO1.K-562 180 bp overlap
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ASXL1 1 dataset
ChIP HEK293T GSE51673.ASXL1.HEK293T 131 bp overlap
BCL3 1 dataset
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 260 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 89 bp overlap
BRD3 1 dataset
ChIP THP-1_iBET-BD1-PMA GSE138084.BRD3.THP-1_iBET-BD1-PMA 257 bp overlap
BRD4 14 datasets
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 348 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 245 bp overlap
ChIP MDA-MB-231_JQ1-neg_L GSE136151.BRD4.MDA-MB-231_JQ1-neg_L 157 bp overlap
ChIP MOLM-14_CA25 GSE65138.BRD4.MOLM-14_CA25 260 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 326 bp overlap
ChIP MV4-11_DMSO GSE71776.BRD4.MV4-11_DMSO 366 bp overlap
ChIP MV4-11_IBET GSE71776.BRD4.MV4-11_IBET 357 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 173 bp overlap
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 335 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 300 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 305 bp overlap
ChIP THP-1_iBET-BD1-PMA GSE138084.BRD4.THP-1_iBET-BD1-PMA 366 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 360 bp overlap
ChIP THP-1_iBET-BD2-PMA GSE138084.BRD4.THP-1_iBET-BD2-PMA 223 bp overlap
CDK8 2 datasets
ChIP HCT-116_NOMO GSE38258.CDK8.HCT-116_NOMO 366 bp overlap
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 366 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 182 bp overlap
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 117 bp overlap
CREB5 2 datasets
ChIP SK-N-SH ENCFF144PMI 66 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 76 bp overlap
CTBP2 1 dataset
ChIP LNCaP_DHT24H GSE58428.CTBP2.LNCaP_DHT24H 167 bp overlap
DDX5 1 dataset
ChIP BT-549 GSE112961.DDX5.BT-549 260 bp overlap
EHF 1 dataset
ChIP A-549 ENCSR171TDM.EHF.A-549 234 bp overlap
ELF1 1 dataset
ChIP A-549 ENCSR000BPT.ELF1.A-549 354 bp overlap
ELF4 2 datasets
ChIP HEK293T ENCSR778QLY.ELF4.HEK293T 362 bp overlap
ChIP K-562 ENCSR638QHV.ELF4.K-562 276 bp overlap
EMX1 2 datasets
ChIP WTC11 ENCFF692RZJ 366 bp overlap
ChIP WTC11 ENCFF692RZJ 343 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 148 bp overlap
ESR1 4 datasets
ChIP T-47D GSE148277.ESR1.T-47D 261 bp overlap
ChIP T-47D ENCSR000BJS.ESR1.T-47D 130 bp overlap
ChIP T-47D ENCSR000BKN.ESR1.T-47D 93 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 90 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 201 bp overlap
ETS1 2 datasets
ChIP HEY-A8 GSE101832.ETS1.HEY-A8 366 bp overlap
ChIP OVCAR-8 GSE101832.ETS1.OVCAR-8 159 bp overlap
EWSR1 1 dataset
ChIP K-562 ENCSR142YYA.EWSR1.K-562 278 bp overlap
FIP1L1 1 dataset
ChIP Hep-G2 ENCSR313VZG.FIP1L1.Hep-G2 191 bp overlap
FOS 1 dataset
ChIP MG-63-3 GSE74230.FOS.MG-63-3 282 bp overlap
FOSB 1 dataset
ChIP A549 ENCFF029EEU 199 bp overlap
FOSL2 1 dataset
ChIP A-549 ENCSR448TVS.FOSL2.A-549 344 bp overlap
FOXA1 5 datasets
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 69 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 84 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 157 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 120 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 195 bp overlap
FOXA2 1 dataset
ChIP PANC-1 GSE119930.FOXA2.PANC-1 208 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 245 bp overlap
GATA3 2 datasets
ChIP T-47D GSE51274.GATA3.T-47D 114 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 95 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 84 bp overlap
GATA4 1 dataset
ChIP A-549 GSE85002.GATA4.A-549 357 bp overlap
HMBOX1 1 dataset
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 366 bp overlap
HMGA2 1 dataset
ChIP A549 ENCFF624CAQ 260 bp overlap
HNRNPK 1 dataset
ChIP primary-keratinocyte GSE122327.HNRNPK.primary-keratinocyte 366 bp overlap
HOXA7 2 datasets
ChIP A549 ENCFF746ZBJ 322 bp overlap
ChIP A549 ENCFF746ZBJ 53 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 213 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 144 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 285 bp overlap
INSM2 1 dataset
ChIP HEK293 ENCSR382GSF.INSM2.HEK293 326 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 216 bp overlap
JUN 1 dataset
ChIP A549 ENCFF846DUV 231 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 153 bp overlap
JUND 6 datasets
ChIP A-549 ENCSR000BRF.JUND.A-549 170 bp overlap
ChIP HCT-116 ENCSR000BSA.JUND.HCT-116 138 bp overlap
ChIP HT29_DSMO GSE77039.JUND.HT29_DSMO 285 bp overlap
ChIP SK-N-SH ENCFF551NEQ 156 bp overlap
ChIP SK-N-SH ENCFF551NEQ 306 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 130 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 163 bp overlap
KDM5B 3 datasets
ChIP K-562 ENCSR000AQA.KDM5B.K-562 147 bp overlap
ChIP K562 ENCFF049WWX 366 bp overlap
ChIP K562 ENCFF049WWX 224 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 327 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 118 bp overlap
KMT2A 1 dataset
ChIP L826 GSE83671.KMT2A.L826 254 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 354 bp overlap
MBD4 2 datasets
ChIP HepG2 ENCFF785HSD 272 bp overlap
ChIP HepG2 ENCFF785HSD 366 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 334 bp overlap
MED1 1 dataset
ChIP MOLM-14 GSE65138.MED1.MOLM-14 241 bp overlap
MEF2B 1 dataset
ChIP DLBCL GSE110682.MEF2B.DLBCL 148 bp overlap
MLLT1_FKB 1 dataset
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 233 bp overlap
MPHOSPH8 1 dataset
ChIP H9 GSE95374.MPHOSPH8.H9 281 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 122 bp overlap
MYNN 2 datasets
ChIP K-562 ENCSR737LTZ.MYNN.K-562 109 bp overlap
ChIP K562 ENCFF399UNK 250 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 366 bp overlap
NEUROD1 2 datasets
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 366 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 366 bp overlap
NFATC1 4 datasets
ChIP GM12878 ENCFF023CAZ 291 bp overlap
ChIP GM12878 ENCFF023CAZ 366 bp overlap
ChIP GM12878 ENCFF023CAZ 244 bp overlap
ChIP GM12878 ENCSR000BQL.NFATC1.GM12878 366 bp overlap
NFATC4 1 dataset
ChIP WTC11 ENCFF744MZI 246 bp overlap
NONO 1 dataset
ChIP HepG2 ENCFF361UQH 140 bp overlap
NOTCH1 1 dataset
ChIP pulmonary-artery_endothelial-cell_siPFKFB3 GSE89786.NOTCH1.pulmonary-artery_endothelial-cell_siPFKFB3 188 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_TNF-DEX_IA1 GSE125623.NR3C1.BEAS-2B_TNF-DEX_IA1 277 bp overlap
ChIP BEAS-2B_shNR3C1_TNF-DEX_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF-DEX_IA1 151 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 222 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 308 bp overlap
PBX1-2-3 1 dataset
ChIP 697 GSE138031.PBX1-2-3.697 187 bp overlap
PBX3 2 datasets
ChIP A-549 ENCSR000BTN.PBX3.A-549 103 bp overlap
ChIP A-549 ENCSR000BTN.PBX3.A-549 119 bp overlap
PGR 2 datasets
ChIP AB32 GSE31129.PGR.AB32 236 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 112 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 366 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 276 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 216 bp overlap
PML 2 datasets
ChIP GM12878 ENCSR000BQM.PML.GM12878 95 bp overlap
ChIP K-562 ENCSR000BQY.PML.K-562 319 bp overlap
POLR2A 31 datasets
ChIP GM12878 ENCFF263VRI 261 bp overlap
ChIP GM12878 ENCFF263VRI 366 bp overlap
ChIP GM12891 ENCFF012SUT 366 bp overlap
ChIP GM15510 ENCFF880HVJ 160 bp overlap
ChIP GM18951 ENCFF079KKO 297 bp overlap
ChIP GM18951 ENCFF079KKO 299 bp overlap
ChIP GM18951 ENCFF079KKO 73 bp overlap
ChIP GM19099 ENCFF726IBN 366 bp overlap
ChIP H1 ENCFF566JSR 142 bp overlap
ChIP H1 ENCFF566JSR 269 bp overlap
ChIP H1 ENCFF770YBQ 366 bp overlap
ChIP H1 ENCFF833NJP 269 bp overlap
ChIP H1 ENCFF833NJP 184 bp overlap
ChIP HCT116 ENCFF508RDJ 317 bp overlap
ChIP HCT116 ENCFF508RDJ 311 bp overlap
ChIP HCT116 ENCFF849NGT 366 bp overlap
ChIP HL-60 ENCFF321XKE 366 bp overlap
ChIP HepG2 ENCFF252NAR 59 bp overlap
ChIP HepG2 ENCFF350RIU 314 bp overlap
ChIP HepG2 ENCFF350RIU 202 bp overlap
ChIP HepG2 ENCFF718XAJ 266 bp overlap
ChIP HepG2 ENCFF736SLT 366 bp overlap
ChIP K562 ENCFF214YGX 366 bp overlap
ChIP K562 ENCFF215CWW 366 bp overlap
ChIP MCF-7 ENCFF164XWP 213 bp overlap
ChIP Panc1 ENCFF290KAB 366 bp overlap
ChIP Raji ENCFF613VGX 254 bp overlap
ChIP SK-N-SH ENCFF683PFH 248 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 362 bp overlap
ChIP erythroblast ENCFF498VMR 248 bp overlap
ChIP erythroblast ENCFF498VMR 229 bp overlap
POLR2G 2 datasets
ChIP HepG2 ENCFF241AEG 366 bp overlap
ChIP HepG2 ENCFF508UTS 366 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 141 bp overlap
PRRX2 1 dataset
ChIP WTC11 ENCFF107JGJ 259 bp overlap
RARB 1 dataset
ChIP A549 ENCFF837HCQ 145 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 105 bp overlap
RBM22 2 datasets
ChIP HepG2 ENCFF292RVQ 366 bp overlap
ChIP HepG2 ENCFF561IAJ 366 bp overlap
REL 1 dataset
ChIP Ramos GSE139810.REL.Ramos 271 bp overlap
RELA 3 datasets
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 184 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 133 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 324 bp overlap
REST 3 datasets
ChIP A-549 ENCSR892DRK.REST.A-549 366 bp overlap
ChIP A-549 ENCSR000BQP.REST.A-549 148 bp overlap
ChIP hippocampus GSE144226.REST.hippocampus 233 bp overlap
RPA2_phospho 3 datasets
ChIP HeLa GSE108172.RPA2_phospho.HeLa 366 bp overlap
ChIP HeLa_shASF GSE108172.RPA2_phospho.HeLa_shASF 366 bp overlap
ChIP HeLa_shTOP1 GSE108172.RPA2_phospho.HeLa_shTOP1 366 bp overlap
RUVBL2 1 dataset
ChIP Huh-7 GSE97411.RUVBL2.Huh-7 289 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 214 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 343 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 53 bp overlap
SIRT6 1 dataset
ChIP K-562 ENCSR000AUB.SIRT6.K-562 171 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_PBS GSE134556.SMAD2-3.HUVEC-C_PBS 169 bp overlap
SMAD3 4 datasets
ChIP H69_5TGF GSE145250.SMAD3.H69_5TGF 97 bp overlap
ChIP HCC1954 GSE104760.SMAD3.HCC1954 201 bp overlap
ChIP HMLE GSE104760.SMAD3.HMLE 281 bp overlap
ChIP HMLE_Doxycicline_TGFb GSE104760.SMAD3.HMLE_Doxycicline_TGFb 322 bp overlap
SMARCA4 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 247 bp overlap
SMARCC1 1 dataset
ChIP SCCOHT-1 GSE117734.SMARCC1.SCCOHT-1 115 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 350 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 201 bp overlap
SRSF4 3 datasets
ChIP Hep-G2 GSE120104.SRSF4.Hep-G2 121 bp overlap
ChIP Hep-G2 GSE120104.SRSF4.Hep-G2 205 bp overlap
ChIP Hep-G2 ENCSR696MBC.SRSF4.Hep-G2 172 bp overlap
SSRP1 1 dataset
ChIP hiF-T GSE98758.SSRP1.hiF-T 74 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 209 bp overlap
STAT5A 1 dataset
ChIP GM12878 ENCSR000BQZ.STAT5A.GM12878 248 bp overlap
SUPT5H 9 datasets
ChIP DLD-1_NELFE-AID_treated GSE144786.SUPT5H.DLD-1_NELFE-AID_treated 366 bp overlap
ChIP HCT-116_DMSO_pSer666 GSE138548.SUPT5H.HCT-116_DMSO_pSer666 346 bp overlap
ChIP HCT-116_DMSO_pThr806 GSE138548.SUPT5H.HCT-116_DMSO_pThr806 366 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 131 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 170 bp overlap
ChIP U2OS_DMSO GSE115365.SUPT5H.U2OS_DMSO 366 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 366 bp overlap
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 366 bp overlap
ChIP U2OS_siMYC_High GSE115365.SUPT5H.U2OS_siMYC_High 209 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 179 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 207 bp overlap
TFCP2L1 1 dataset
ChIP A549 ENCFF393VBT 290 bp overlap
TP53 2 datasets
ChIP A549 ENCFF229ULU 269 bp overlap
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 205 bp overlap
TP63 2 datasets
ChIP A549 ENCFF399JYQ 238 bp overlap
ChIP A549 ENCFF399JYQ 51 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 189 bp overlap
XRN2 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.XRN2.DLD-1_NELFCD-AID 185 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 234 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 112 bp overlap
ZBED1 1 dataset
ChIP GM12878 ENCSR207PFI.ZBED1.GM12878 160 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 185 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 233 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 335 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 141 bp overlap
ZNF532 1 dataset
ChIP WTC11 ENCFF373VBX 129 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 269 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 359 bp overlap
ZNF671 1 dataset
ChIP WTC11 ENCFF053HBV 257 bp overlap
ZNF695 1 dataset
ChIP HEK293T GSE78099.ZNF695.HEK293T 302 bp overlap
ZSCAN5C 1 dataset
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 299 bp overlap
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