chr12 : 119,089,271 119,089,712
441 bp 81 TFs 2 linked genes
This 441 bp open chromatin element is linked to SRRM4 and CCDC60 and is bound by 81 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SRRM4 107.8 kb Distal Multiome
CCDC60 245.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:119,084,271 – 119,094,712
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
AR 1 dataset
ChIP WTC11 ENCFF267GQJ 88 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 386 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 441 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 441 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 403 bp overlap
BCL11A 4 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 114 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 204 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 376 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 296 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 358 bp overlap
BRD4 3 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 397 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 441 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 327 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 261 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 205 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 67 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 313 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 350 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 177 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 364 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 350 bp overlap
CREB1 7 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 422 bp overlap
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 72 bp overlap
ChIP MCF-7 ENCFF341ZEM 83 bp overlap
ChIP MCF-7 ENCFF867SAS 79 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 142 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 111 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 313 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 219 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 441 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF460KDD 337 bp overlap
ChIP BLaER1 ENCFF896HSY 295 bp overlap
EGR1 1 dataset
ChIP H1 ENCFF451BLH 261 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 281 bp overlap
EP300 4 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 314 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 156 bp overlap
ChIP hESC GSE17917.EP300.hESC 267 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 202 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 388 bp overlap
EZH2 3 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 51 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 119 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 441 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 218 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 441 bp overlap
ChIP DE DE-GATA4-2 441 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 388 bp overlap
ChIP DE DE-GATA6-2 441 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 264 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 297 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 295 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 441 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 383 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 364 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 397 bp overlap
GFI1 1 dataset
Motif ES_0h ES_0h-GFI1_MA0038.3 11 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 393 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 441 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 218 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 242 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 322 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 353 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 427 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 422 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 342 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 144 bp overlap
LEF1 2 datasets
ChIP hESC GSE64758.LEF1.hESC 267 bp overlap
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 220 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 92 bp overlap
ChIP H1 ENCFF914VQY 330 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 355 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 305 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 366 bp overlap
MXD4 1 dataset
ChIP WTC11 ENCFF044PLT 261 bp overlap
MYC 1 dataset
ChIP H1 ENCFF794ZJT 265 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 265 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 347 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 441 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 441 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 415 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 441 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 441 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 354 bp overlap
ChIP hESC GSE18292.NANOG.hESC 316 bp overlap
NFYB 1 dataset
ChIP WTC11 ENCFF751ZTQ 268 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 378 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 281 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 361 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 264 bp overlap
NR3C1 2 datasets
ChIP WTC11 ENCFF422OEM 441 bp overlap
ChIP WTC11 ENCFF422OEM 283 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF833NJP 387 bp overlap
POU5F1 11 datasets
ChIP BG03 GSE21614.POU5F1.BG03 203 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 441 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 441 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 209 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 228 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 199 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 441 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 331 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 260 bp overlap
Pgr 1 dataset
Motif ES_0h ES_0h-Pgr_MA2323.1 17 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 316 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 393 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 259 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 126 bp overlap
ChIP K562 ENCFF248CGR 251 bp overlap
ChIP K562 ENCFF957ORK 251 bp overlap
REST 1 dataset
ChIP H1 ENCFF429RUE 193 bp overlap
SIN3A 1 dataset
ChIP H1 ENCFF042ZSL 415 bp overlap
SMAD2 2 datasets
ChIP hESC GSE29422.SMAD2.hESC 201 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 431 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 396 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 441 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 284 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 430 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 268 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 259 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 441 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 441 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 419 bp overlap
SMAD3 6 datasets
ChIP BG03 GSE21614.SMAD3.BG03 362 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 213 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 194 bp overlap
ChIP WTC11 ENCFF815YYQ 228 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 341 bp overlap
ChIP hESC GSE75297.SMAD3.hESC 263 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 168 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 432 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 415 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 266 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 326 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 304 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 384 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 388 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 441 bp overlap
SOX2 6 datasets
ChIP H9 GSE46837.SOX2.H9 416 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 441 bp overlap
ChIP hESC GSE69479.SOX2.hESC 385 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 389 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 374 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 210 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 428 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 261 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 441 bp overlap
ChIP WTC11 ENCFF688PEU 396 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 138 bp overlap
SRF 1 dataset
ChIP H1 ENCFF036PEF 225 bp overlap
Stat4 1 dataset
Motif ES_0h ES_0h-Stat4_MA0518.2 10 bp overlap
Stat6 1 dataset
Motif ES_0h ES_0h-Stat6_MA0520.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 270 bp overlap
TBP 2 datasets
ChIP hESC GSE122298.TBP.hESC 244 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 178 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 139 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 338 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 409 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 335 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 251 bp overlap
TP53 1 dataset
ChIP H9 GSE39912.TP53.H9 213 bp overlap
Wt1 1 dataset
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 307 bp overlap
ZNF114 2 datasets
ChIP GM23338 ENCFF631OSW 346 bp overlap
ChIP GM23338 ENCSR555KFE.ZNF114.GM23338 357 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 366 bp overlap
ZNF396 1 dataset
ChIP WTC11 ENCFF776JWJ 301 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 125 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 441 bp overlap