chr12 : 89,707,124 89,707,268
144 bp 94 TFs 2 linked genes
This 144 bp open chromatin element is linked to ATP2B1 and ATP2B1-AS1 and is bound by 94 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ATP2B1 1.6 kb Proximal Proximity
ATP2B1-AS1 1.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:89,702,124 – 89,712,268
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
94 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 144 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 100 bp overlap
ARID2 1 dataset
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 144 bp overlap
ARID4B 1 dataset
ChIP HepG2 ENCFF519OXJ 144 bp overlap
ASH2L 1 dataset
ChIP HepG2 ENCFF207QHL 144 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 144 bp overlap
BHLHE40 2 datasets
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 133 bp overlap
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 57 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 116 bp overlap
BRD2 3 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 144 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 124 bp overlap
ChIP SUM149PT_JQ1 GSE131097.BRD2.SUM149PT_JQ1 142 bp overlap
BRD3 1 dataset
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 102 bp overlap
BRD4 8 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 104 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 144 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 116 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 73 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 138 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 138 bp overlap
ChIP PC-3 GSE137207.BRD4.PC-3 144 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 51 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 142 bp overlap
CHD1 1 dataset
ChIP HeLa-S3 ENCSR392EAA.CHD1.HeLa-S3 142 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 120 bp overlap
CTCF 3 datasets
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 124 bp overlap
ChIP HFFc6 ENCFF005CJI 144 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 138 bp overlap
DMAP1 1 dataset
ChIP Hep-G2 ENCSR670YPQ.DMAP1.Hep-G2 117 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 108 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF813OXE 144 bp overlap
EGR1 5 datasets
ChIP K-562 ENCSR024CNP.EGR1.K-562 83 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 67 bp overlap
ChIP K562 ENCFF006PJY 59 bp overlap
ChIP K562 ENCFF113OPQ 120 bp overlap
ChIP K562 ENCFF895KGN 119 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 144 bp overlap
FOXA1 1 dataset
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 91 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 114 bp overlap
FOXM1 1 dataset
ChIP GM12878 ENCFF264DJE 144 bp overlap
GATA1 1 dataset
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 144 bp overlap
GATA6 1 dataset
ChIP PATU8988 GSE47535.GATA6.PATU8988 144 bp overlap
INTS13 1 dataset
ChIP monocyte GSE106359.INTS13.monocyte 62 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 144 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 105 bp overlap
KDM1A 1 dataset
ChIP SKNO-1_GSK690 GSE71739.KDM1A.SKNO-1_GSK690 77 bp overlap
KLF10 1 dataset
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 144 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 130 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 116 bp overlap
KMT2A 1 dataset
ChIP HEK293T_C-term GSE90762.KMT2A.HEK293T_C-term 68 bp overlap
MAX 12 datasets
ChIP A-549 ENCSR000BTJ.MAX.A-549 112 bp overlap
ChIP HeLa-S3 ENCFF398RFF 144 bp overlap
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 114 bp overlap
ChIP HeLa-S3 ENCSR000ECN.MAX.HeLa-S3 95 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 141 bp overlap
ChIP HepG2 ENCFF507HCX 144 bp overlap
ChIP Ishikawa ENCFF064TDQ 144 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 115 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 132 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 144 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 144 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 72 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 114 bp overlap
MED12 1 dataset
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 58 bp overlap
MEIS1 1 dataset
ChIP HepG2 ENCFF706DID 144 bp overlap
MEN1 1 dataset
ChIP PC-3 GSE132827.MEN1.PC-3 118 bp overlap
MXI1 3 datasets
ChIP HeLa-S3 ENCFF947VEL 144 bp overlap
ChIP HeLa-S3 ENCSR000ECU.MXI1.HeLa-S3 116 bp overlap
ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 102 bp overlap
MYC 3 datasets
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 75 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 144 bp overlap
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 110 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 138 bp overlap
ChIP SH-EP_MYCNER_plusOHT GSE111905.MYCN.SH-EP_MYCNER_plusOHT 90 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 117 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 144 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 144 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 144 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 91 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 144 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 91 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 144 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 132 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 144 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 122 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 144 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 144 bp overlap
POLR2A 1 dataset
ChIP HeLa-S3 ENCFF773DNG 144 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 144 bp overlap
RAD21 4 datasets
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 144 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 144 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 144 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 144 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 144 bp overlap
RNF2 2 datasets
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 144 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 144 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 144 bp overlap
SIN3A 2 datasets
ChIP A-549 ENCSR000BRM.SIN3A.A-549 144 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 140 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 60 bp overlap
SMARCA4 5 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 144 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 144 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 144 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 144 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 144 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 63 bp overlap
SMC1A 1 dataset
ChIP A-549 GSE76893.SMC1A.A-549 124 bp overlap
SOX6 1 dataset
ChIP HepG2 ENCFF767OCK 51 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 58 bp overlap
TAF1 1 dataset
ChIP HeLa-S3 ENCSR000BHT.TAF1.HeLa-S3 144 bp overlap
TBP 1 dataset
ChIP HeLa-S3 ENCFF715NNJ 144 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 144 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 144 bp overlap
USF1 6 datasets
ChIP A-549 ENCSR000BJB.USF1.A-549 89 bp overlap
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 98 bp overlap
ChIP HepG2 ENCFF201JKA 144 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 119 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 107 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 112 bp overlap
USF2 4 datasets
ChIP A549 ENCFF343KII 144 bp overlap
ChIP GM12878 GSE97661.USF2.GM12878 129 bp overlap
ChIP HeLa-S3 ENCSR000ECW.USF2.HeLa-S3 130 bp overlap
ChIP Hep-G2 GSE97661.USF2.Hep-G2 59 bp overlap
YY1 2 datasets
ChIP A-549 ENCSR000BPM.YY1.A-549 144 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 144 bp overlap
ZC3H8 1 dataset
ChIP HepG2 ENCFF862NOM 92 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 144 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 124 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 144 bp overlap
ZNF121 1 dataset
ChIP HEK293 GSE76494.ZNF121.HEK293 144 bp overlap
ZNF221 1 dataset
ChIP HepG2 ENCFF374BUN 59 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 144 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 144 bp overlap
ZNF430 1 dataset
ChIP HepG2 ENCFF967HQR 144 bp overlap
ZNF510 1 dataset
ChIP HepG2 ENCFF088QOO 135 bp overlap
ZNF816 1 dataset
ChIP HepG2 ENCFF294VPD 65 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 90 bp overlap