chr12 : 11,922,242 11,922,661
419 bp 79 TFs 0 linked genes
This 419 bp open chromatin element has no linked target genes and is bound by 79 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:11,917,242 – 11,927,661
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
ARID3A 1 dataset
ChIP HepG2 ENCFF341DES 398 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 274 bp overlap
ARNTL 3 datasets
ChIP U2OS GSE130602.ARNTL.U2OS 277 bp overlap
ChIP U2OS_DMSO GSE130506.ARNTL.U2OS_DMSO 277 bp overlap
ChIP U2OS_cordycepin GSE130506.ARNTL.U2OS_cordycepin 319 bp overlap
ATF3 1 dataset
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 134 bp overlap
BCL6 1 dataset
ChIP HepG2 ENCFF423EJH 210 bp overlap
BRD4 4 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 334 bp overlap
ChIP HCC1937 GSE124748.BRD4.HCC1937 196 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 402 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 211 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 292 bp overlap
CREM 1 dataset
ChIP HepG2 ENCFF049UDY 412 bp overlap
CRY2 1 dataset
ChIP U2OS GSE130602.CRY2.U2OS 419 bp overlap
CTCFL 2 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 81 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 80 bp overlap
DRAP1 1 dataset
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 222 bp overlap
EBF1 5 datasets
ChIP GM12878 ENCFF167CZS 182 bp overlap
ChIP GM12878 ENCFF813OXE 128 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 83 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 155 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 173 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 209 bp overlap
EP300 3 datasets
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 419 bp overlap
ChIP HepG2 ENCFF354ACD 259 bp overlap
ChIP HepG2 ENCFF354ACD 215 bp overlap
ESR1 1 dataset
ChIP VCaP_E2_ERA GSE43985.ESR1.VCaP_E2_ERA 132 bp overlap
ETV1 1 dataset
ChIP A-375 GSE80443.ETV1.A-375 192 bp overlap
ETV5 1 dataset
ChIP HepG2 ENCFF456LSA 335 bp overlap
EZH2 2 datasets
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 68 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 77 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 191 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 419 bp overlap
ChIP DE DE-FOXA2-2 419 bp overlap
ChIP HepG2 ENCFF533COJ 154 bp overlap
ChIP HepG2 ENCFF894AYY 244 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 170 bp overlap
GATA3 1 dataset
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 93 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 419 bp overlap
ChIP DE DE-GATA4-2 389 bp overlap
ChIP foregut GSE117136.GATA4.foregut 241 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 248 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 255 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 419 bp overlap
ChIP DE DE-GATA6-2 419 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 282 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 87 bp overlap
ChIP H9 ERP004206.GATA6.H9 56 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 419 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 373 bp overlap
ChIP foregut GSE117136.GATA6.foregut 303 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 257 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 253 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 255 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 301 bp overlap
HDAC2 1 dataset
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 153 bp overlap
HNF4A 2 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 73 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 279 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 267 bp overlap
KDM1A 2 datasets
ChIP HepG2 ENCFF240UWG 373 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 140 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 315 bp overlap
MAX 1 dataset
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 77 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 96 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 90 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 84 bp overlap
NCOA2 1 dataset
ChIP HepG2 ENCFF853BJJ 279 bp overlap
NR2F2 1 dataset
ChIP Hep-G2 ENCSR000BVM.NR2F2.Hep-G2 137 bp overlap
NR3C1 1 dataset
ChIP NALM-6 GSE67046.NR3C1.NALM-6 91 bp overlap
ONECUT1 4 datasets
ChIP H9 ERP004206.ONECUT1.H9 179 bp overlap
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 127 bp overlap
ChIP HepG2 ENCFF243FIR 183 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 274 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 76 bp overlap
PDX1 4 datasets
ChIP hESC GSE58685.PDX1.hESC 114 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 114 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 157 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 270 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 97 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 327 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 419 bp overlap
RAD21 1 dataset
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 120 bp overlap
RELA 1 dataset
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 168 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 111 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 73 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 376 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 105 bp overlap
SIX2 4 datasets
ChIP HEK GSE73865.SIX2.HEK 155 bp overlap
ChIP HEK GSE73865.SIX2.HEK 109 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 150 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 372 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 191 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 419 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 274 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 288 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 304 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 287 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 392 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 419 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 155 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 159 bp overlap
SMC1 1 dataset
ChIP IMR-90_G GSE118494.SMC1.IMR-90_G 194 bp overlap
SMC3 3 datasets
ChIP HeLa GSE126990.SMC3.HeLa 143 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 143 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 143 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 264 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 266 bp overlap
SOX6 2 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 417 bp overlap
ChIP HepG2 ENCFF767OCK 417 bp overlap
SP1 1 dataset
ChIP HepG2 ENCFF123KAM 105 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 137 bp overlap
TBX2 2 datasets
ChIP Hep-G2 ENCSR410FEH.TBX2.Hep-G2 86 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 226 bp overlap
TCF7 2 datasets
ChIP Hep-G2 ENCSR444LIN.TCF7.Hep-G2 155 bp overlap
ChIP Hep-G2 ENCSR444LIN.TCF7.Hep-G2 85 bp overlap
TCF7L2 3 datasets
ChIP HepG2 ENCFF125ABE 354 bp overlap
ChIP HepG2 ENCFF125ABE 153 bp overlap
ChIP HepG2 ENCFF510OLG 332 bp overlap
TEAD4 1 dataset
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 270 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 67 bp overlap
TP53 2 datasets
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 162 bp overlap
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 256 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 112 bp overlap
XRCC5 2 datasets
ChIP HepG2 ENCFF330PDO 239 bp overlap
ChIP HepG2 ENCFF680LVJ 240 bp overlap
ZBTB7B 3 datasets
ChIP Hep-G2 ENCSR322ULL.ZBTB7B.Hep-G2 167 bp overlap
ChIP Hep-G2 ENCSR322ULL.ZBTB7B.Hep-G2 103 bp overlap
ChIP HepG2 ENCFF763OCV 254 bp overlap
ZEB1 1 dataset
ChIP Hep-G2 ENCSR000BVN.ZEB1.Hep-G2 269 bp overlap
ZFP64 1 dataset
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 131 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 208 bp overlap
ZNF143 1 dataset
ChIP HeLa GSE39263.ZNF143.HeLa 221 bp overlap
ZNF24 1 dataset
ChIP Hep-G2 ENCSR362NWP.ZNF24.Hep-G2 117 bp overlap