chr11 : 92,511,593 – 92,512,150
557 bp 114 TFs 1 linked gene
This 557 bp open chromatin element is linked to FAT3 and is bound by 114 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
FAT3 287.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:92,506,593 – 92,517,150
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
114 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_SH3_DHT GSE79128.AR.VCaP_SH3_DHT 218 bp overlap
ARNT::HIF1A 2 datasets
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif ES_0h ES_0h-ARNTHIF1A_MA0259.2 5 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 552 bp overlap
ChIP H1 ENCFF399KAM 557 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 533 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 446 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 405 bp overlap
Arnt 2 datasets
Motif DE_12h DE_12h-Arnt_MA0004.1 6 bp overlap
Motif ES_0h ES_0h-Arnt_MA0004.1 6 bp overlap
BCL11A 4 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 246 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 176 bp overlap
BRD4 2 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 154 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 158 bp overlap
CDX1 1 dataset
Motif ES_0h ES_0h-CDX1_MA0878.3 10 bp overlap
CDX2 1 dataset
Motif ES_0h ES_0h-CDX2_MA0465.3 8 bp overlap
CDX4 1 dataset
Motif ES_0h ES_0h-CDX4_MA1473.2 9 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 138 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 169 bp overlap
CHD7 5 datasets
ChIP H1 ENCFF126NLU 270 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 217 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 254 bp overlap
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 384 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 557 bp overlap
CLOCK 2 datasets
Motif DE_12h DE_12h-CLOCK_MA0819.3 7 bp overlap
Motif ES_0h ES_0h-CLOCK_MA0819.3 7 bp overlap
CREB1 2 datasets
ChIP H1 ENCFF955PMP 270 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 179 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 502 bp overlap
Creb3l2 2 datasets
Motif DE_12h DE_12h-Creb3l2_MA0608.1 9 bp overlap
Motif ES_0h ES_0h-Creb3l2_MA0608.1 9 bp overlap
EGR1 1 dataset
ChIP H1 ENCFF451BLH 261 bp overlap
EOMES 3 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
Motif ES_0h ES_0h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 232 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 261 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 243 bp overlap
ChIP hESC GSE17917.EP300.hESC 408 bp overlap
ESR2 1 dataset
Motif ES_0h ES_0h-ESR2_MA0258.2 15 bp overlap
FOXJ2::ELF1 2 datasets
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
Motif ES_0h ES_0h-FOXJ2ELF1_MA1952.2 11 bp overlap
FOXO1::ELF1 2 datasets
Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif ES_0h ES_0h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::ELK1 2 datasets
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
Motif ES_0h ES_0h-FOXO1ELK1_MA1954.2 13 bp overlap
GATA1::TAL1 2 datasets
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
Motif ES_0h ES_0h-GATA1TAL1_MA0140.3 17 bp overlap
GATA6 4 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 342 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 312 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 557 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 532 bp overlap
HAND2 1 dataset
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 210 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 214 bp overlap
HOXA10 1 dataset
Motif ES_0h ES_0h-HOXA10_MA0899.2 9 bp overlap
HOXB13 1 dataset
Motif ES_0h ES_0h-HOXB13_MA0901.3 9 bp overlap
HOXB4 2 datasets
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC10 1 dataset
Motif ES_0h ES_0h-HOXC10_MA0905.2 9 bp overlap
HOXC12 1 dataset
Motif ES_0h ES_0h-HOXC12_MA0906.2 10 bp overlap
HOXC4 2 datasets
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXD12::ELK1 1 dataset
Motif ES_0h ES_0h-HOXD12ELK1_MA1958.2 13 bp overlap
HOXD4 2 datasets
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
HOXD9 1 dataset
Motif ES_0h ES_0h-HOXD9_MA0913.3 9 bp overlap
Hand1 2 datasets
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Motif ES_0h ES_0h-Hand1_MA2123.1 9 bp overlap
JUN 2 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 363 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 302 bp overlap
KLF1 1 dataset
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
KLF2 1 dataset
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
LIN54 1 dataset
Motif ES_0h ES_0h-LIN54_MA0619.2 7 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 195 bp overlap
MAX 5 datasets
Motif DE_12h DE_12h-MAX_MA0058.4 6 bp overlap
Motif ES_0h ES_0h-MAX_MA0058.4 6 bp overlap
ChIP H1 ENCFF601FOM 299 bp overlap
ChIP H1 ENCFF914VQY 305 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 295 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MNT 2 datasets
Motif DE_12h DE_12h-MNT_MA0825.2 6 bp overlap
Motif ES_0h ES_0h-MNT_MA0825.2 6 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 261 bp overlap
MYC 2 datasets
Motif DE_12h DE_12h-MYC_MA0147.4 8 bp overlap
Motif ES_0h ES_0h-MYC_MA0147.4 8 bp overlap
MYCN 2 datasets
Motif DE_12h DE_12h-MYCN_MA0104.5 8 bp overlap
Motif ES_0h ES_0h-MYCN_MA0104.5 8 bp overlap
Mlxip 2 datasets
Motif DE_12h DE_12h-Mlxip_MA0622.2 6 bp overlap
Motif ES_0h ES_0h-Mlxip_MA0622.2 6 bp overlap
Msgn1 1 dataset
Motif ES_0h ES_0h-Msgn1_MA1524.3 10 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 296 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 222 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 557 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 550 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 236 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 444 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 506 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 321 bp overlap
ChIP hESC GSE18292.NANOG.hESC 235 bp overlap
ChIP hESC GSE20650.NANOG.hESC 170 bp overlap
NEUROG2 1 dataset
Motif ES_0h ES_0h-NEUROG2_MA1642.2 7 bp overlap
NFIC 1 dataset
Motif ES_0h ES_0h-NFIC_MA1527.2 15 bp overlap
NFIC::TLX1 1 dataset
Motif ES_0h ES_0h-NFICTLX1_MA0119.1 14 bp overlap
NKX2-3 2 datasets
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
Motif ES_0h ES_0h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 2 datasets
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
Motif ES_0h ES_0h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 2 datasets
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
Motif ES_0h ES_0h-NKX2-8_MA0673.2 8 bp overlap
NR6A1 2 datasets
Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap
Motif ES_0h ES_0h-NR6A1_MA1541.2 14 bp overlap
Nfat5 2 datasets
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap
Nkx2-1 2 datasets
Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap
Motif ES_0h ES_0h-Nkx2-1_MA1994.2 7 bp overlap
Npas2 2 datasets
Motif DE_12h DE_12h-Npas2_MA0626.2 8 bp overlap
Motif ES_0h ES_0h-Npas2_MA0626.2 8 bp overlap
Nr2e1 2 datasets
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
Motif ES_0h ES_0h-Nr2e1_MA0676.1 9 bp overlap
PATZ1 1 dataset
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PBX3 1 dataset
Motif ES_0h ES_0h-PBX3_MA1114.2 11 bp overlap
PHOX2A 1 dataset
Motif ES_0h ES_0h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif ES_0h ES_0h-PHOX2B_MA0681.3 12 bp overlap
PKNOX1 1 dataset
Motif ES_0h ES_0h-PKNOX1_MA0782.3 10 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 7 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 557 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 227 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 157 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 557 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 182 bp overlap
PROP1 1 dataset
Motif ES_0h ES_0h-PROP1_MA0715.1 11 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Ptf1A 1 dataset
Motif ES_0h ES_0h-Ptf1A_MA1618.2 9 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 246 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 192 bp overlap
RELA 2 datasets
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
Motif ES_0h ES_0h-RELA_MA0107.1 10 bp overlap
RFX3 2 datasets
Motif DE_12h DE_12h-RFX3_MA0798.3 16 bp overlap
Motif ES_0h ES_0h-RFX3_MA0798.3 16 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 227 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 143 bp overlap
SMARCA4 5 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 315 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 379 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 252 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 557 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 557 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 197 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 557 bp overlap
SMARCC1 6 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 465 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 355 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 343 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 136 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 273 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 557 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 137 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 557 bp overlap
ChIP hESC GSE18292.SOX2.hESC 216 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 296 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 246 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 279 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 265 bp overlap
Stat2 2 datasets
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 289 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 212 bp overlap
TBX1 2 datasets
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
Motif ES_0h ES_0h-TBX1_MA0805.1 8 bp overlap
TBX21 2 datasets
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
Motif ES_0h ES_0h-TBX21_MA0690.3 10 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 249 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 227 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 425 bp overlap
TEAD1 4 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
ChIP WTC11 ENCFF502QUV 333 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 143 bp overlap
TEAD2 2 datasets
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
Motif ES_0h ES_0h-TEAD2_MA1121.2 7 bp overlap
TEAD3 2 datasets
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap
TEAD4 7 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 201 bp overlap
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 527 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 202 bp overlap
ChIP WTC11 ENCFF114TZS 234 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 255 bp overlap
THRA 1 dataset
Motif ES_0h ES_0h-THRA_MA1969.2 18 bp overlap
TWIST1 1 dataset
Motif ES_0h ES_0h-TWIST1_MA1123.3 8 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 206 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 307 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 224 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 164 bp overlap
ZBTB18 1 dataset
Motif ES_0h ES_0h-ZBTB18_MA0698.2 11 bp overlap
ZNF114 2 datasets
ChIP GM23338 ENCFF631OSW 311 bp overlap
ChIP GM23338 ENCSR555KFE.ZNF114.GM23338 226 bp overlap
ZNF157 2 datasets
Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap
Motif ES_0h ES_0h-ZNF157_MA2331.1 21 bp overlap
ZNF213 1 dataset
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF274 1 dataset
Motif ES_0h ES_0h-ZNF274_MA1592.2 12 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 297 bp overlap
ZNF354C 2 datasets
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
Motif ES_0h ES_0h-ZNF354C_MA0130.1 6 bp overlap
ZNF418 1 dataset
Motif ES_0h ES_0h-ZNF418_MA1980.1 15 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 125 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 524 bp overlap
ZNF528 1 dataset
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap
ZNF558 3 datasets
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
Motif ES_0h ES_0h-ZNF558_MA2335.1 29 bp overlap
Motif ES_0h ES_0h-ZNF558_MA2335.1 29 bp overlap
ZNF667 2 datasets
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
Motif ES_0h ES_0h-ZNF667_MA1984.2 11 bp overlap
ZNF671 1 dataset
ChIP WTC11 ENCFF053HBV 265 bp overlap
ZSCAN18 1 dataset
ChIP WTC11 ENCFF867QWX 246 bp overlap
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