chr9:112,771,981–112,772,634

chr9 : 112,771,981 – 112,772,634

653 bp 89 TFs 7 linked genes

This 653 bp open chromatin element is linked to 7 target genes and is bound by 89 transcription factors.

Linked Genes

7 genes

Gene	Expression	Dist. to TSS	Distance	Link type
SNX30		21.5 kb	Distal	Multiome
INIP		54.2 kb	Distal	Multiome
ZNF883		239.9 kb	Distal	Multiome
ENSG00000291094		239.9 kb	Distal	Multiome
ZFP37		284.5 kb	Distal	Multiome
KIAA1958		285.4 kb	Distal	Multiome
HSDL2-AS1		285.6 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

89 transcription factors

ChIP SEM_CX4945 GSE90762.AFF1.SEM_CX4945 238 bp overlap

ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 217 bp overlap

ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 71 bp overlap

ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 58 bp overlap

ARID1A 3 datasets

ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 165 bp overlap

ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 76 bp overlap

ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 133 bp overlap

ASH2L 1 dataset

ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 210 bp overlap

BCL11A 1 dataset

ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 59 bp overlap

ChIP B-cell_GERMINAL_CENTER GSE43350.BCL6.B-cell_GERMINAL_CENTER 456 bp overlap

ChIP K-562 ENCSR000ATW.CBX8.K-562 118 bp overlap

CEBPA 1 dataset

ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 79 bp overlap

CREB1 2 datasets

ChIP GM12878 ENCFF870CVH 86 bp overlap

ChIP GM12878 ENCFF870CVH 294 bp overlap

CREBBP 2 datasets

ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 334 bp overlap

ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 337 bp overlap

ChIP GM12878 ENCSR839XZU.CREM.GM12878 187 bp overlap

EBF1 2 datasets

ChIP GM12878 ENCFF813OXE 213 bp overlap

ChIP NALM-6 GSE126300.EBF1.NALM-6 331 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 201 bp overlap

ERF::FIGLA 2 datasets

Motif DE_48h DE_48h-ERFFIGLA_MA1934.2 13 bp overlap

Motif DE_60h DE_60h-ERFFIGLA_MA1934.2 13 bp overlap

ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 255 bp overlap

ESR1 4 datasets

ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 210 bp overlap

ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 88 bp overlap

ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 88 bp overlap

ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 52 bp overlap

ETV2::FIGLA 2 datasets

Motif DE_48h DE_48h-ETV2FIGLA_MA1941.2 13 bp overlap

Motif DE_60h DE_60h-ETV2FIGLA_MA1941.2 13 bp overlap

ETV5::DRGX 2 datasets

Motif DE_48h DE_48h-ETV5DRGX_MA1944.2 12 bp overlap

Motif DE_60h DE_60h-ETV5DRGX_MA1944.2 12 bp overlap

ETV5::FIGLA 2 datasets

Motif DE_48h DE_48h-ETV5FIGLA_MA1945.2 14 bp overlap

Motif DE_60h DE_60h-ETV5FIGLA_MA1945.2 14 bp overlap

ChIP SKH1 GSE87283.EVI1.SKH1 185 bp overlap

FLI1::DRGX 2 datasets

Motif DE_48h DE_48h-FLI1DRGX_MA1949.2 14 bp overlap

Motif DE_60h DE_60h-FLI1DRGX_MA1949.2 14 bp overlap

FOXA1 11 datasets

ChIP MCF-7 ENCFF465LTH 90 bp overlap

ChIP MCF-7 GSE81714.FOXA1.MCF-7 59 bp overlap

ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 112 bp overlap

ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 91 bp overlap

ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 55 bp overlap

ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 99 bp overlap

ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 273 bp overlap

ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 211 bp overlap

ChIP breast-cancer_heregulin-ICI GSE101407.FOXA1.breast-cancer_heregulin-ICI 79 bp overlap

ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 61 bp overlap

ChIP primary-breast-cancer_B4_DSG GSE114737.FOXA1.primary-breast-cancer_B4_DSG 62 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 540 bp overlap

ChIP DE DE-FOXA2-2 653 bp overlap

FOXO1 1 dataset

ChIP CD34 GSE80773.FOXO1.CD34 106 bp overlap

FOXP1 1 dataset

ChIP B-cell_IgD-pos GSE114803.FOXP1.B-cell_IgD-pos 288 bp overlap

GATA2 1 dataset

ChIP SKH1 GSE87283.GATA2.SKH1 88 bp overlap

GATA4 3 datasets

ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 84 bp overlap

ChIP DE DE-GATA4-1 360 bp overlap

ChIP DE DE-GATA4-2 471 bp overlap

GATA6 3 datasets

ChIP DE DE-GATA6-1 285 bp overlap

ChIP DE DE-GATA6-2 548 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 86 bp overlap

HDAC1 1 dataset

ChIP K562 ENCFF968WBH 132 bp overlap

HOXB13 1 dataset

ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 106 bp overlap

IKZF1 1 dataset

ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 342 bp overlap

IRF4 2 datasets

ChIP B-cell GSE142493.IRF4.B-cell 119 bp overlap

ChIP T-cell GSE136853.IRF4.T-cell 91 bp overlap

KDM1A 3 datasets

ChIP K562 ENCFF128TYE 134 bp overlap

ChIP K562 ENCFF133OLU 78 bp overlap

ChIP K562 ENCFF934ZRG 110 bp overlap

KMT2A 3 datasets

ChIP L826 GSE83671.KMT2A.L826 351 bp overlap

ChIP MV4-11 GSE79899.KMT2A.MV4-11 369 bp overlap

ChIP SEM GSE83671.KMT2A.SEM 356 bp overlap

LDB1 2 datasets

ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 470 bp overlap

ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 321 bp overlap

ChIP CD4_TH2 GSE72266.MAF.CD4_TH2 84 bp overlap

ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 294 bp overlap

ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 292 bp overlap

MEF2B 1 dataset

ChIP tonsil GSE110682.MEF2B.tonsil 215 bp overlap

MEIS1 1 dataset

Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap

ChIP MCF-7 ENCSR663ZZZ.MNT.MCF-7 145 bp overlap

ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 330 bp overlap

Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap

Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap

ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 348 bp overlap

NEUROD1 1 dataset

ChIP K-562 ENCSR986CDX.NEUROD1.K-562 157 bp overlap

NFIC 3 datasets

ChIP GM12878 ENCFF259FWL 231 bp overlap

ChIP GM12878 ENCFF259FWL 438 bp overlap

ChIP GM12878 ENCSR000BRN.NFIC.GM12878 57 bp overlap

NR3C1 8 datasets

ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 359 bp overlap

ChIP BEAS-2B_DEX GSE125623.NR3C1.BEAS-2B_DEX 59 bp overlap

ChIP IMR-90 ERP007093.NR3C1.IMR-90 67 bp overlap

ChIP IMR-90_GLUCC ERP007081.NR3C1.IMR-90_GLUCC 60 bp overlap

ChIP MDA-MB-231 GSE152203.NR3C1.MDA-MB-231 65 bp overlap

ChIP NALM-6 GSE67046.NR3C1.NALM-6 356 bp overlap

ChIP RS4-11_DEX GSE71616.NR3C1.RS4-11_DEX 146 bp overlap

ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 267 bp overlap

ChIP NALM-6 GSE126300.PAX5.NALM-6 290 bp overlap

ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 615 bp overlap

ChIP T-47D GSE31129.PGR.T-47D 151 bp overlap

ChIP T-47D_E2PG GSE68356.PGR.T-47D_E2PG 76 bp overlap

ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 137 bp overlap

ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 107 bp overlap

ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 73 bp overlap

ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 66 bp overlap

ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 80 bp overlap

ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 69 bp overlap

PKNOX1 1 dataset

ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 370 bp overlap

POLR2A 2 datasets

ChIP spleen ENCFF044PYR 418 bp overlap

ChIP transverse colon ENCFF098HBD 368 bp overlap

RNF2 2 datasets

ChIP K-562 ENCSR820GND.RNF2.K-562 320 bp overlap

ChIP K562 ENCFF653BQJ 217 bp overlap

RUNX1 4 datasets

ChIP 697 GSE138031.RUNX1.697 53 bp overlap

ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 337 bp overlap

ChIP NALM-6 GSE126300.RUNX1.NALM-6 392 bp overlap

ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 350 bp overlap

RUNX1T1 1 dataset

ChIP Kasumi-1_E2 GSE102697.RUNX1T1.Kasumi-1_E2 174 bp overlap

RUNX1_mut 1 dataset

ChIP CD34 GSE111917.RUNX1_mut.CD34 140 bp overlap

RUNX2 1 dataset

ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 153 bp overlap

SCRT2 1 dataset

ChIP HEK293 ENCFF711QQB 521 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 495 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 543 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 480 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 413 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 392 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 412 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 550 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 317 bp overlap

SMAD4 1 dataset

ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap

SMARCA4 1 dataset

ChIP MCF-7 GSE123284.SMARCA4.MCF-7 120 bp overlap

SMARCB1 1 dataset

ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 104 bp overlap

SOX10 1 dataset

Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 376 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 401 bp overlap

SPI1 34 datasets

ChIP BDMC_donorG GSE128834.SPI1.BDMC_donorG 100 bp overlap

ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 258 bp overlap

ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 182 bp overlap

ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 174 bp overlap

ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 283 bp overlap

ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 303 bp overlap

ChIP DC_LPS GSE123347.SPI1.DC_LPS 111 bp overlap

ChIP DC_LPS GSE123347.SPI1.DC_LPS 108 bp overlap

ChIP EM-3 GSE128834.SPI1.EM-3 186 bp overlap

ChIP GM12878 ENCFF134LCP 75 bp overlap

ChIP GM12891 ENCFF563IUT 140 bp overlap

ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 245 bp overlap

ChIP HL-60 ENCFF645GBT 271 bp overlap

ChIP K-562 GSE70482.SPI1.K-562 267 bp overlap

ChIP K-562 ENCSR000BGW.SPI1.K-562 151 bp overlap

ChIP KG-1 GSE128834.SPI1.KG-1 267 bp overlap

ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 257 bp overlap

ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 296 bp overlap

ChIP NB4 GSE128834.SPI1.NB4 187 bp overlap

ChIP NCI-H929 GSE56857.SPI1.NCI-H929 110 bp overlap

ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 171 bp overlap

ChIP RS4-11 GSE71616.SPI1.RS4-11 280 bp overlap

ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 309 bp overlap

ChIP THP-1 GSE128834.SPI1.THP-1 101 bp overlap

ChIP dendrite GSE58864.SPI1.dendrite 190 bp overlap

ChIP monocyte GSE31621.SPI1.monocyte 255 bp overlap

ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 178 bp overlap

ChIP primary-B-cell_donorA GSE128834.SPI1.primary-B-cell_donorA 306 bp overlap

ChIP primary-B-cell_donorC GSE128834.SPI1.primary-B-cell_donorC 161 bp overlap

ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 172 bp overlap

ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 155 bp overlap

ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 163 bp overlap

ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 152 bp overlap

ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 123 bp overlap

SPIB 3 datasets

ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 137 bp overlap

ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 299 bp overlap

ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 311 bp overlap

STAT1 2 datasets

ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 198 bp overlap

ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 197 bp overlap

STAT3 5 datasets

ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 89 bp overlap

ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 83 bp overlap

ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 78 bp overlap

ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 133 bp overlap

ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 170 bp overlap

STAT5B 1 dataset

ChIP CD8_H9RETR GSE64713.STAT5B.CD8_H9RETR 101 bp overlap

SUZ12 1 dataset

ChIP ProEs GSE59087.SUZ12.ProEs 97 bp overlap

ChIP ProEs GSE59087.TAL1.ProEs 117 bp overlap

Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap

TBX15 1 dataset

Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap

TBX18 1 dataset

Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap

TBX19 1 dataset

Motif DE_60h DE_60h-TBX19_MA0804.2 17 bp overlap

Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap

Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap

Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap

Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap

Motif DE_60h DE_60h-TBXT_MA0009.2 16 bp overlap

TCF12 1 dataset

ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 197 bp overlap

ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 352 bp overlap

TEAD4 2 datasets

ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 76 bp overlap

ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 65 bp overlap

TERF2 1 dataset

ChIP LCL GSE55053.TERF2.LCL 286 bp overlap

TFAP4::ETV1 2 datasets

Motif DE_48h DE_48h-TFAP4ETV1_MA1966.2 13 bp overlap

Motif DE_60h DE_60h-TFAP4ETV1_MA1966.2 13 bp overlap

TFAP4::FLI1 2 datasets

Motif DE_48h DE_48h-TFAP4FLI1_MA1967.2 14 bp overlap

Motif DE_60h DE_60h-TFAP4FLI1_MA1967.2 14 bp overlap

YY1AP1 2 datasets

ChIP T-47D_E2 GSE125594.YY1AP1.T-47D_E2 75 bp overlap

ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 119 bp overlap

ZBTB7A 1 dataset

ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 159 bp overlap

ZNF652 1 dataset

Motif DE_48h DE_48h-ZNF652_MA1657.2 9 bp overlap