chr9:97,436,823–97,437,760

chr9 : 97,436,823 – 97,437,760

937 bp 98 TFs 8 linked genes

This 937 bp open chromatin element is linked to 8 target genes and is bound by 98 transcription factors.

Linked Genes

8 genes

Gene	Expression	Dist. to TSS	Distance	Link type
TDRD7		25.3 kb	Distal	Multiome
TMOD1		64.2 kb	Distal	Multiome
TSTD2		195.9 kb	Distal	Multiome
NCBP1		196.4 kb	Distal	Multiome
ENSG00000203279		198.7 kb	Distal	Multiome
ENSG00000235494		214.8 kb	Distal	Multiome
XPA		259.9 kb	Distal	Multiome
ZNF782		582.9 kb	Distal	Multiome+HiCAR

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

98 transcription factors

ChIP LHSAR_HOXB13 GSE56288.AR.LHSAR_HOXB13 305 bp overlap

ChIP LHSAR_HOXB13 GSE56288.AR.LHSAR_HOXB13 95 bp overlap

ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 261 bp overlap

ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 203 bp overlap

ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 119 bp overlap

BAF155 1 dataset

ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 51 bp overlap

BCL6B 2 datasets

Motif DE_60h DE_60h-BCL6B_MA0731.1 17 bp overlap

Motif DE_72h DE_72h-BCL6B_MA0731.1 17 bp overlap

ChIP H-1_DE GSE126661.BRD3.H-1_DE 318 bp overlap

BRD4 3 datasets

ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 187 bp overlap

ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 678 bp overlap

ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 496 bp overlap

CDX2 4 datasets

ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 141 bp overlap

ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 510 bp overlap

ChIP intestinal-cell GSE115314.CDX2.intestinal-cell 364 bp overlap

ChIP intestinal-cell GSE115314.CDX2.intestinal-cell 59 bp overlap

CEBPA 9 datasets

Motif DE_48h DE_48h-CEBPA_MA0102.5 10 bp overlap

Motif DE_60h DE_60h-CEBPA_MA0102.5 10 bp overlap

Motif DE_72h DE_72h-CEBPA_MA0102.5 10 bp overlap

ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 134 bp overlap

ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 139 bp overlap

ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 113 bp overlap

ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 126 bp overlap

ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 221 bp overlap

ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 126 bp overlap

CEBPB 2 datasets

ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 142 bp overlap

ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 177 bp overlap

CEBPD 3 datasets

Motif DE_48h DE_48h-CEBPD_MA0836.3 8 bp overlap

Motif DE_60h DE_60h-CEBPD_MA0836.3 8 bp overlap

Motif DE_72h DE_72h-CEBPD_MA0836.3 8 bp overlap

CREB5 1 dataset

ChIP LNCaP GSE137775.CREB5.LNCaP 186 bp overlap

CREBBP 1 dataset

ChIP fibroblast_proliferating GSE106146.CREBBP.fibroblast_proliferating 62 bp overlap

CUX1 3 datasets

Motif DE_48h DE_48h-CUX1_MA0754.3 9 bp overlap

Motif DE_60h DE_60h-CUX1_MA0754.3 9 bp overlap

Motif DE_72h DE_72h-CUX1_MA0754.3 9 bp overlap

CUX2 3 datasets

Motif DE_48h DE_48h-CUX2_MA0755.2 9 bp overlap

Motif DE_60h DE_60h-CUX2_MA0755.2 9 bp overlap

Motif DE_72h DE_72h-CUX2_MA0755.2 9 bp overlap

Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap

Motif DE_48h DE_48h-DBP_MA0639.2 10 bp overlap

Motif DE_60h DE_60h-DBP_MA0639.2 10 bp overlap

Motif DE_72h DE_72h-DBP_MA0639.2 10 bp overlap

Ddit3::Cebpa 1 dataset

Motif DE_48h DE_48h-Ddit3Cebpa_MA0019.2 10 bp overlap

Dmbx1 2 datasets

Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap

Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap

E2F6 2 datasets

Motif DE_60h DE_60h-E2F6_MA0471.3 8 bp overlap

Motif DE_72h DE_72h-E2F6_MA0471.3 8 bp overlap

EOMES 2 datasets

ChIP hESC GSE26097.EOMES.hESC 467 bp overlap

ChIP hESC GSE26097.EOMES.hESC 338 bp overlap

EP300 1 dataset

ChIP fibroblast_proliferating GSE106146.EP300.fibroblast_proliferating 122 bp overlap

ETV2::DRGX 2 datasets

Motif DE_48h DE_48h-ETV2DRGX_MA1940.2 12 bp overlap

Motif DE_60h DE_60h-ETV2DRGX_MA1940.2 12 bp overlap

ETV5::DRGX 2 datasets

Motif DE_48h DE_48h-ETV5DRGX_MA1944.2 12 bp overlap

Motif DE_60h DE_60h-ETV5DRGX_MA1944.2 12 bp overlap

FOXA1 3 datasets

ChIP LNCaP GSE52725.FOXA1.LNCaP 148 bp overlap

ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 171 bp overlap

ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 128 bp overlap

FOXA2 3 datasets

ChIP Caco-2 GSE66218.FOXA2.Caco-2 201 bp overlap

ChIP DE DE-FOXA2-1 909 bp overlap

ChIP DE DE-FOXA2-2 862 bp overlap

GABPA 1 dataset

ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 132 bp overlap

GATA2 7 datasets

Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap

Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap

ChIP LNCaP GSE38391.GATA2.LNCaP 192 bp overlap

ChIP LNCaP GSE52725.GATA2.LNCaP 192 bp overlap

ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 130 bp overlap

ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 198 bp overlap

ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 140 bp overlap

GATA4 7 datasets

ChIP DE DE-GATA4-1 937 bp overlap

ChIP DE DE-GATA4-2 937 bp overlap

Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap

Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap

ChIP YCC-3 GSE51705.GATA4.YCC-3 182 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 242 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 436 bp overlap

GATA5 2 datasets

Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap

Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap

GATA6 15 datasets

ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 230 bp overlap

ChIP DE DE-GATA6-1 937 bp overlap

ChIP DE DE-GATA6-2 937 bp overlap

Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap

Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 439 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 937 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 297 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 937 bp overlap

ChIP ESO-26 GSE132680.GATA6.ESO-26 287 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 937 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 824 bp overlap

ChIP YCC-3 GSE51705.GATA6.YCC-3 243 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 881 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 316 bp overlap

GRHL2 4 datasets

Motif DE_48h DE_48h-GRHL2_MA1105.3 8 bp overlap

Motif DE_60h DE_60h-GRHL2_MA1105.3 8 bp overlap

Motif DE_72h DE_72h-GRHL2_MA1105.3 8 bp overlap

ChIP LNCaP GSE80256.GRHL2.LNCaP 328 bp overlap

Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap

Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap

Gata3 2 datasets

Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap

Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap

HAND2 1 dataset

ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 372 bp overlap

Motif DE_48h DE_48h-HLF_MA0043.4 9 bp overlap

Motif DE_60h DE_60h-HLF_MA0043.4 9 bp overlap

Motif DE_72h DE_72h-HLF_MA0043.4 9 bp overlap

HNF1A 1 dataset

Motif DE_48h DE_48h-HNF1A_MA0046.3 13 bp overlap

HNF1B 1 dataset

Motif DE_48h DE_48h-HNF1B_MA0153.2 13 bp overlap

HNF4A 1 dataset

ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 208 bp overlap

HOXB13 1 dataset

ChIP LNCaP GSE56288.HOXB13.LNCaP 142 bp overlap

ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 349 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 280 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 363 bp overlap

KDM1A 1 dataset

ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 202 bp overlap

MEIS1 3 datasets

Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap

Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap

Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap

MEIS2 3 datasets

Motif DE_48h DE_48h-MEIS2_MA0774.1 8 bp overlap

Motif DE_48h DE_48h-MEIS2_MA1640.2 9 bp overlap

Motif DE_60h DE_60h-MEIS2_MA0774.1 8 bp overlap

MEIS3 2 datasets

Motif DE_48h DE_48h-MEIS3_MA0775.2 7 bp overlap

Motif DE_60h DE_60h-MEIS3_MA0775.2 7 bp overlap

ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 351 bp overlap

NFIL3 3 datasets

Motif DE_48h DE_48h-NFIL3_MA0025.3 9 bp overlap

Motif DE_60h DE_60h-NFIL3_MA0025.3 9 bp overlap

Motif DE_72h DE_72h-NFIL3_MA0025.3 9 bp overlap

NUP98-HOXA9 1 dataset

ChIP HEK293-FT GSE62586.NUP98-HOXA9.HEK293-FT 225 bp overlap

Nr1h3::Rxra 3 datasets

Motif DE_48h DE_48h-Nr1h3Rxra_MA0494.2 16 bp overlap

Motif DE_60h DE_60h-Nr1h3Rxra_MA0494.2 16 bp overlap

Motif DE_72h DE_72h-Nr1h3Rxra_MA0494.2 16 bp overlap

ONECUT1 5 datasets

Motif DE_48h DE_48h-ONECUT1_MA0679.3 9 bp overlap

Motif DE_60h DE_60h-ONECUT1_MA0679.3 9 bp overlap

Motif DE_72h DE_72h-ONECUT1_MA0679.3 9 bp overlap

ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 135 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 329 bp overlap

ONECUT2 3 datasets

Motif DE_48h DE_48h-ONECUT2_MA0756.3 8 bp overlap

Motif DE_60h DE_60h-ONECUT2_MA0756.3 8 bp overlap

Motif DE_72h DE_72h-ONECUT2_MA0756.3 8 bp overlap

ONECUT3 3 datasets

Motif DE_48h DE_48h-ONECUT3_MA0757.2 12 bp overlap

Motif DE_60h DE_60h-ONECUT3_MA0757.2 12 bp overlap

Motif DE_72h DE_72h-ONECUT3_MA0757.2 12 bp overlap

Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap

Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap

PHOX2B 1 dataset

ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 168 bp overlap

PITX1 1 dataset

Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap

PITX3 1 dataset

Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap

POLR2A 2 datasets

ChIP Peyer's patch ENCFF767HVN 417 bp overlap

ChIP Peyer's patch ENCFF767HVN 417 bp overlap

PRDM1 1 dataset

ChIP fetal_testis GSE100639.PRDM1.fetal_testis 146 bp overlap

Prdm15 2 datasets

Motif DE_60h DE_60h-Prdm15_MA1616.2 11 bp overlap

Motif DE_72h DE_72h-Prdm15_MA1616.2 11 bp overlap

RARA::RXRG 3 datasets

Motif DE_48h DE_48h-RARARXRG_MA1149.2 17 bp overlap

Motif DE_60h DE_60h-RARARXRG_MA1149.2 17 bp overlap

Motif DE_72h DE_72h-RARARXRG_MA1149.2 17 bp overlap

RHOXF1 1 dataset

Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap

SATB1 5 datasets

ChIP MCF-10A GSE123292.SATB1.MCF-10A 350 bp overlap

ChIP MCF-10A_CP GSE123292.SATB1.MCF-10A_CP 317 bp overlap

ChIP MCF-10A_ICRF GSE123292.SATB1.MCF-10A_ICRF 309 bp overlap

ChIP MCF-10A_N-term_CUT1 GSE123292.SATB1.MCF-10A_N-term_CUT1 400 bp overlap

ChIP MCF-10A_dHD GSE123292.SATB1.MCF-10A_dHD 516 bp overlap

SIN3A 1 dataset

ChIP Hep-G2 ENCSR000BGL.SIN3A.Hep-G2 133 bp overlap

Motif DE_48h DE_48h-SIX2_MA1119.2 11 bp overlap

SMAD2 1 dataset

ChIP endoderm GSE29422.SMAD2.endoderm 246 bp overlap

SMAD2-3 4 datasets

ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 139 bp overlap

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 937 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 762 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 352 bp overlap

SMAD2_3 4 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 357 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 681 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 937 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 937 bp overlap

SMAD3 1 dataset

ChIP endoderm GSE29422.SMAD3.endoderm 218 bp overlap

SMAD4 4 datasets

ChIP Caco-2 GSE112946.SMAD4.Caco-2 302 bp overlap

ChIP Caco-2 GSE112946.SMAD4.Caco-2 219 bp overlap

ChIP endoderm GSE29422.SMAD4.endoderm 149 bp overlap

ChIP endoderm GSE29422.SMAD4.endoderm 236 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 210 bp overlap

SOX17 2 datasets

ChIP DE_D2 DED2-SOX17_Batch_II 363 bp overlap

ChIP DE_D2 DED2-SOX17_Batch_II 286 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 913 bp overlap

SPIB 2 datasets

Motif DE_48h DE_48h-SPIB_MA0081.3 13 bp overlap

Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap

Spi1 2 datasets

Motif DE_48h DE_48h-Spi1_MA0080.7 13 bp overlap

Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 366 bp overlap

TBX1 2 datasets

Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap

Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap

TBX15 2 datasets

Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap

Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap

TBX18 2 datasets

Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap

Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap

TBX19 2 datasets

Motif DE_60h DE_60h-TBX19_MA0804.2 17 bp overlap

Motif DE_72h DE_72h-TBX19_MA0804.2 17 bp overlap

TBX2 2 datasets

Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap

Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap

TBX21 2 datasets

Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap

Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap

TBX3 2 datasets

Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap

Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap

TBX4 2 datasets

Motif DE_48h DE_48h-TBX4_MA0806.1 8 bp overlap

Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap

TBX5 2 datasets

Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap

Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap

TBXT 2 datasets

Motif DE_60h DE_60h-TBXT_MA0009.2 16 bp overlap

Motif DE_72h DE_72h-TBXT_MA0009.2 16 bp overlap

TCF21 1 dataset

ChIP HCASMC GSE124011.TCF21.HCASMC 126 bp overlap

TRPS1 2 datasets

Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap

Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap

ZBTB6 1 dataset

Motif DE_60h DE_60h-ZBTB6_MA1581.2 9 bp overlap

ZKSCAN1 1 dataset

ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 160 bp overlap

ZNF16 1 dataset

Motif DE_60h DE_60h-ZNF16_MA1654.2 21 bp overlap

ZNF382 2 datasets

Motif DE_60h DE_60h-ZNF382_MA1594.1 24 bp overlap

Motif DE_72h DE_72h-ZNF382_MA1594.1 24 bp overlap

ZNF528 2 datasets

Motif DE_48h DE_48h-ZNF528_MA1597.1 17 bp overlap

Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap

ZNF675 1 dataset

Motif DE_48h DE_48h-ZNF675_MA1714.2 19 bp overlap

ZNF750 1 dataset

ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 197 bp overlap

ZNF770 2 datasets

Motif DE_48h DE_48h-ZNF770_MA2099.1 8 bp overlap

Motif DE_60h DE_60h-ZNF770_MA2099.1 8 bp overlap

ZSCAN16 1 dataset

Motif DE_48h DE_48h-ZSCAN16_MA2100.1 18 bp overlap

Zfp809 2 datasets

Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap

Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap