chr9 : 68,417,697 68,418,944
1,247 bp 118 TFs 2 linked genes
This 1.2 kb open chromatin element is linked to ZNG1C and PIP5K1B and is bound by 118 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ZNG1C 176.5 kb Distal Multiome
PIP5K1B 286.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:68,412,697 – 68,423,944
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
118 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif DE_60h DE_60h-ASCL1_MA1631.2 9 bp overlap
ATOH7 1 dataset
Motif DE_72h DE_72h-ATOH7_MA1468.1 10 bp overlap
Atoh1 1 dataset
Motif DE_72h DE_72h-Atoh1_MA0461.3 8 bp overlap
BHLHA15 1 dataset
Motif DE_72h DE_72h-BHLHA15_MA0607.2 10 bp overlap
BHLHE22 1 dataset
Motif DE_72h DE_72h-BHLHE22_MA0818.2 10 bp overlap
BRD4 1 dataset
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 201 bp overlap
CTCF 59 datasets
ChIP A-549 ENCSR000AUE.CTCF.A-549 63 bp overlap
ChIP CD14-positive monocyte ENCFF087XLR 222 bp overlap
ChIP CD14-positive monocyte ENCFF087XLR 423 bp overlap
Motif DE_60h DE_60h-CTCF_MA0139.2 15 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 163 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 67 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 442 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 177 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 175 bp overlap
ChIP GM10266 ENCFF241YYF 59 bp overlap
ChIP GM12864 ENCFF357DQE 285 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 76 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 435 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 97 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 106 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 231 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 223 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 113 bp overlap
ChIP KMS-11 ENCFF853JKX 170 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 57 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 109 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 273 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 125 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 159 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 146 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 324 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 520 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 328 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 460 bp overlap
ChIP RWPE2 ENCFF911IEE 63 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 119 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 139 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 73 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 186 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 75 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 365 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 459 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF041CKA 88 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF282ONV 152 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 160 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 407 bp overlap
ChIP gastroesophageal sphincter ENCFF918KPI 337 bp overlap
ChIP gastroesophageal-sphincter ENCSR186NVR.CTCF.gastroesophageal-sphincter 166 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 313 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 203 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 510 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 80 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 154 bp overlap
ChIP heart ENCSR778ZPK.CTCF.heart 271 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 256 bp overlap
ChIP heart left ventricle ENCFF888ERQ 166 bp overlap
ChIP heart right ventricle ENCFF725NNJ 156 bp overlap
ChIP heart_left-ventricle ENCSR718SDR.CTCF.heart_left-ventricle 340 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 234 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 124 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 80 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF335XTP 368 bp overlap
ChIP BLaER1 ENCFF460KDD 266 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
EBF1 1 dataset
Motif DE_60h DE_60h-EBF1_MA0154.5 11 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 136 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 320 bp overlap
ChIP hESC GSE26097.EOMES.hESC 305 bp overlap
ESR2 1 dataset
Motif DE_60h DE_60h-ESR2_MA0258.2 15 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 500 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 394 bp overlap
EZH2 7 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 620 bp overlap
ChIP Karpas-422_CPI360-D4 GSE134136.EZH2.Karpas-422_CPI360-D4 257 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.EZH2.Karpas-422_CPI360-D8 298 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.EZH2.Karpas-422_CPI360-D8 451 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 321 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 369 bp overlap
ChIP neural progenitor cell ENCFF018MKA 718 bp overlap
Ebf4 1 dataset
Motif DE_60h DE_60h-Ebf4_MA2122.1 11 bp overlap
FEZF2 1 dataset
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 901 bp overlap
ChIP DE DE-FOXA2-2 1056 bp overlap
Motif DE_60h DE_60h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_60h DE_60h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap
FOXD2 1 dataset
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
FOXH1 2 datasets
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
Motif DE_72h DE_72h-FOXH1_MA0479.2 8 bp overlap
FOXI1 1 dataset
Motif DE_60h DE_60h-FOXI1_MA0042.2 7 bp overlap
FOXP1 1 dataset
Motif DE_60h DE_60h-FOXP1_MA0481.4 7 bp overlap
FOXP4 1 dataset
Motif DE_60h DE_60h-FOXP4_MA2117.1 7 bp overlap
Foxj3 1 dataset
Motif DE_60h DE_60h-Foxj3_MA0851.2 9 bp overlap
Foxq1 1 dataset
Motif DE_60h DE_60h-Foxq1_MA0040.2 10 bp overlap
GATA4 10 datasets
ChIP DE DE-GATA4-1 1151 bp overlap
ChIP DE DE-GATA4-2 1170 bp overlap
ChIP G296S GSE85628.GATA4.G296S 215 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 215 bp overlap
ChIP G296S_4 GSE85628.GATA4.G296S_4 389 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 365 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 394 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 638 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 511 bp overlap
ChIP foregut GSE117136.GATA4.foregut 618 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 1079 bp overlap
ChIP DE DE-GATA6-2 1153 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 462 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 404 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 454 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 1074 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 400 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 794 bp overlap
ChIP foregut GSE117136.GATA6.foregut 301 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 448 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 342 bp overlap
HNF4A 1 dataset
Motif DE_60h DE_60h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_60h DE_60h-HNF4G_MA0484.3 9 bp overlap
Hnf1A 1 dataset
Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 1 dataset
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
Lef1 1 dataset
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
MED1 3 datasets
ChIP G296S_4 GSE85628.MED1.G296S_4 500 bp overlap
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 170 bp overlap
ChIP RH4 GSE83726.MED1.RH4 302 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 454 bp overlap
MEIS1 2 datasets
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 192 bp overlap
MZF1 1 dataset
Motif DE_72h DE_72h-MZF1_MA0056.3 8 bp overlap
Msgn1 1 dataset
Motif DE_72h DE_72h-Msgn1_MA1524.3 10 bp overlap
NEUROG1 1 dataset
Motif DE_72h DE_72h-NEUROG1_MA0623.2 10 bp overlap
NFIC 1 dataset
Motif DE_60h DE_60h-NFIC_MA1527.2 15 bp overlap
NFIX 1 dataset
Motif DE_60h DE_60h-NFIX_MA1528.2 14 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 430 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 242 bp overlap
Nr1h3::Rxra 3 datasets
Motif DE_60h DE_60h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif DE_72h DE_72h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif DE_72h DE_72h-Nr1h3Rxra_MA0494.2 16 bp overlap
OLIG2 1 dataset
Motif DE_72h DE_72h-OLIG2_MA0678.1 10 bp overlap
OLIG3 1 dataset
Motif DE_72h DE_72h-OLIG3_MA0827.1 10 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 262 bp overlap
PHOX2B 1 dataset
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
POLR2A 1 dataset
ChIP esophagus muscularis mucosa ENCFF791ZXN 139 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 155 bp overlap
PRDM9 2 datasets
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
PROX1 2 datasets
Motif DE_60h DE_60h-PROX1_MA0794.1 12 bp overlap
Motif DE_72h DE_72h-PROX1_MA0794.1 12 bp overlap
Pax7 2 datasets
Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap
Motif DE_72h DE_72h-Pax7_MA0680.3 10 bp overlap
RAD21 4 datasets
ChIP MCF-7 ENCFF694KOM 337 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 159 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 121 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 123 bp overlap
RBPJ 1 dataset
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 181 bp overlap
Rarg 1 dataset
Motif DE_72h DE_72h-Rarg_MA0860.1 17 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 152 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 146 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 262 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 1053 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 373 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 399 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 255 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 776 bp overlap
SMC1A 1 dataset
ChIP HCT-116 GSE112000.SMC1A.HCT-116 213 bp overlap
SMC3 3 datasets
ChIP HeLa GSE126990.SMC3.HeLa 183 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 183 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 183 bp overlap
SNAI1 1 dataset
Motif DE_60h DE_60h-SNAI1_MA1558.2 7 bp overlap
SOX10 1 dataset
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 235 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 668 bp overlap
SP5 1 dataset
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
SPIB 1 dataset
Motif DE_72h DE_72h-SPIB_MA0081.3 13 bp overlap
SREBF1 1 dataset
Motif DE_60h DE_60h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_60h DE_60h-SREBF2_MA0596.1 10 bp overlap
SUZ12 2 datasets
ChIP Karpas-422_CPI360-D4 GSE134136.SUZ12.Karpas-422_CPI360-D4 370 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.SUZ12.Karpas-422_CPI360-D8 359 bp overlap
Six4 2 datasets
Motif DE_60h DE_60h-Six4_MA2001.2 7 bp overlap
Motif DE_72h DE_72h-Six4_MA2001.2 7 bp overlap
Sox11 1 dataset
Motif DE_72h DE_72h-Sox11_MA0869.3 8 bp overlap
Stat2 1 dataset
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
Stat5b 1 dataset
Motif DE_60h DE_60h-Stat5b_MA1625.2 9 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 269 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 283 bp overlap
TBX5 7 datasets
ChIP G296S GSE85628.TBX5.G296S 655 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 655 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 906 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 651 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 353 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 187 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 623 bp overlap
TCF12 1 dataset
Motif DE_60h DE_60h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_60h DE_60h-TCF3_MA0522.4 7 bp overlap
TCF7 2 datasets
Motif DE_60h DE_60h-TCF7_MA0769.3 7 bp overlap
ChIP breast-organoid_BRCA1-mut GSE113909.TCF7.breast-organoid_BRCA1-mut 266 bp overlap
TCF7L1 1 dataset
Motif DE_60h DE_60h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_60h DE_60h-TCF7L2_MA0523.2 9 bp overlap
TEAD1 2 datasets
Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap
Motif DE_72h DE_72h-TEAD1_MA0090.4 9 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap
TP53 1 dataset
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 204 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 185 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 78 bp overlap
Vdr 2 datasets
Motif DE_60h DE_60h-Vdr_MA0693.4 7 bp overlap
Motif DE_72h DE_72h-Vdr_MA0693.4 7 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 188 bp overlap
Yy1 1 dataset
Motif DE_60h DE_60h-Yy1_MA0095.4 8 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 320 bp overlap
ZEB1 1 dataset
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZIM3 2 datasets
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 294 bp overlap
ZNF282 2 datasets
Motif DE_60h DE_60h-ZNF282_MA1154.2 15 bp overlap
Motif DE_72h DE_72h-ZNF282_MA1154.2 15 bp overlap
ZNF354A 1 dataset
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF416 2 datasets
Motif DE_60h DE_60h-ZNF416_MA1979.2 10 bp overlap
Motif DE_72h DE_72h-ZNF416_MA1979.2 10 bp overlap
ZNF558 1 dataset
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
ZNF652 1 dataset
Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap
ZNF675 1 dataset
Motif DE_72h DE_72h-ZNF675_MA1714.2 19 bp overlap
ZNF680 2 datasets
Motif DE_60h DE_60h-ZNF680_MA1729.2 11 bp overlap
Motif DE_72h DE_72h-ZNF680_MA1729.2 11 bp overlap
ZNF766 1 dataset
Motif DE_60h DE_60h-ZNF766_MA2098.1 9 bp overlap
Zic3 1 dataset
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap