chr9 : 21,996,591 – 21,996,737
146 bp 71 TFs 3 linked genes
This 146 bp open chromatin element is linked to ENSG00000266446, CDKN2B-AS1, and CDKN2B and is bound by 71 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000266446 1.1 kb Proximal Proximity
CDKN2B-AS1 2.0 kb Proximal Proximity
CDKN2B 9.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:21,991,591 – 22,001,737
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 80 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 146 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 127 bp overlap
BRCA1 1 dataset
ChIP K-562 ENCSR223MLH.BRCA1.K-562 146 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 146 bp overlap
BRD4 1 dataset
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 79 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 146 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 146 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 146 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 146 bp overlap
ELK4 6 datasets
ChIP HEK293 ENCFF309WLN 146 bp overlap
ChIP HEK293 ENCFF309WLN 146 bp overlap
ChIP HEK293 ENCSR000EVB.ELK4.HEK293 146 bp overlap
ChIP HeLa-S3 ENCFF727BQM 146 bp overlap
ChIP HeLa-S3 ENCFF727BQM 144 bp overlap
ChIP HeLa-S3 ENCSR000EVI.ELK4.HeLa-S3 146 bp overlap
EZH2 4 datasets
ChIP GM23338 ENCFF613YON 146 bp overlap
ChIP H1 ENCFF232NZA 54 bp overlap
ChIP neural progenitor cell ENCFF018MKA 146 bp overlap
ChIP neural progenitor cell ENCFF472NFV 146 bp overlap
FOXA1 3 datasets
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 134 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 81 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 95 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 100 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 112 bp overlap
ChIP U2932 ERP010999.FOXP1.U2932 146 bp overlap
FOXP2 1 dataset
ChIP PFSK1 ENCSR000BGA.FOXP2.PFSK1 97 bp overlap
GATA1 1 dataset
ChIP CD34_Day9_30min GSE104676.GATA1.CD34_Day9_30min 63 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 146 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 146 bp overlap
GLIS2 2 datasets
ChIP HEK293 ENCFF446EIF 107 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 146 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 132 bp overlap
JARID2 3 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 121 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 140 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 146 bp overlap
JUN 1 dataset
ChIP ESC S24-ESC-d0-JUN-exp1 146 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 139 bp overlap
KLF10 3 datasets
ChIP HEK293 ENCFF326EGX 146 bp overlap
ChIP HEK293 ENCFF326EGX 146 bp overlap
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 146 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 146 bp overlap
KLF7 1 dataset
ChIP HEK293 ENCFF599UKL 146 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 146 bp overlap
KLF9 2 datasets
ChIP GBM1A GSE62211.KLF9.GBM1A 146 bp overlap
ChIP HEK293 ENCFF588INF 134 bp overlap
MAX 2 datasets
ChIP HeLa-S3 ENCFF398RFF 146 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 110 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 143 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 55 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 146 bp overlap
NELFA 1 dataset
ChIP HeLa_Flavo-0-H2O2 GSE100742.NELFA.HeLa_Flavo-0-H2O2 66 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 118 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 146 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 146 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCFF016MNJ 89 bp overlap
POLR2A 2 datasets
ChIP HeLa-S3 ENCFF455YYQ 146 bp overlap
ChIP SK-N-MC ENCFF088IVG 146 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 146 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 120 bp overlap
RNF2 1 dataset
ChIP HUES-64 GSE104059.RNF2.HUES-64 146 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 146 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 106 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 111 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 146 bp overlap
SP2 3 datasets
ChIP HEK293 ENCFF181QXT 146 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 146 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 146 bp overlap
SP3 2 datasets
ChIP HEK293 ENCFF087XLA 146 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 146 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 138 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 146 bp overlap
SRF 6 datasets
ChIP HCT-116 ENCSR000BSC.SRF.HCT-116 106 bp overlap
ChIP HCT116 ENCFF497JOF 146 bp overlap
ChIP Ishikawa ENCFF992QXM 146 bp overlap
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 145 bp overlap
ChIP MCF-7 ENCFF508RYE 146 bp overlap
ChIP MCF-7 ENCSR000BVA.SRF.MCF-7 113 bp overlap
SUPT16H 1 dataset
ChIP hiF-T GSE98758.SUPT16H.hiF-T 146 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 146 bp overlap
SUZ12 2 datasets
ChIP H1 ENCFF881NFR 146 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 70 bp overlap
TAF1 2 datasets
ChIP HeLa-S3 ENCFF556LCN 146 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 118 bp overlap
TBP 2 datasets
ChIP HeLa-S3 ENCFF715NNJ 146 bp overlap
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 141 bp overlap
TEAD1 2 datasets
ChIP H69 GSE62274.TEAD1.H69 146 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 83 bp overlap
TEAD4 1 dataset
ChIP HEK293_siCtrl GSE130135.TEAD4.HEK293_siCtrl 146 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 113 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 60 bp overlap
ZBTB8A 1 dataset
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 146 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 146 bp overlap
ZFP69B 1 dataset
ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 146 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 146 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 127 bp overlap
ZNF341 1 dataset
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 146 bp overlap
ZNF449 1 dataset
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 66 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 143 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 146 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 146 bp overlap
ZNF76 1 dataset
ChIP HEK293 ENCFF374TCG 146 bp overlap
ZNF766 1 dataset
ChIP HEK293T GSE78099.ZNF766.HEK293T 75 bp overlap
ZNF770 1 dataset
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 134 bp overlap
ZNF843 1 dataset
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 146 bp overlap
ZSCAN4 1 dataset
ChIP HEK293 ENCFF381BKT 77 bp overlap
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