chr9 : 21,970,447 21,971,494
1,047 bp 93 TFs 1 linked gene
This 1.0 kb open chromatin element is linked to CDKN2A and is bound by 93 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CDKN2A 3.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:21,965,447 – 21,976,494
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 227 bp overlap
Ahr::Arnt 3 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
BCL11A 1 dataset
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
BCOR 4 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 449 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 313 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 455 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 241 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 269 bp overlap
BRD4 8 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 173 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 228 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 590 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 215 bp overlap
ChIP CLL_patient4_4h_CpG_BET GSE109411.BRD4.CLL_patient4_4h_CpG_BET 337 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 406 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 659 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 196 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 250 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 167 bp overlap
ChIP H1 ENCFF095JHA 460 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 268 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 331 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 150 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 178 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 106 bp overlap
CTCF 3 datasets
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 150 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 99 bp overlap
ChIP WI-38VA13 GSE41048.CTCF.WI-38VA13 293 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 53 bp overlap
ChIP BLaER1 ENCFF093OYK 227 bp overlap
ChIP BLaER1 ENCFF364PUR 113 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 148 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 145 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 230 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 157 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
EZH2 32 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 54 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 461 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 112 bp overlap
ChIP GM23338 ENCFF613YON 700 bp overlap
ChIP GM23338 ENCFF613YON 310 bp overlap
ChIP GM23338 ENCFF886DXX 346 bp overlap
ChIP GM23338 ENCFF886DXX 338 bp overlap
ChIP H1 ENCFF232NZA 1047 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 1047 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 62 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 910 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 147 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 478 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 182 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 690 bp overlap
ChIP astrocyte ENCFF365JTP 785 bp overlap
ChIP astrocyte ENCFF365JTP 197 bp overlap
ChIP astrocyte ENCFF365JTP 616 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 1047 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 556 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 502 bp overlap
ChIP fibroblast of lung ENCFF479BAW 490 bp overlap
ChIP fibroblast of lung ENCFF479BAW 605 bp overlap
ChIP hESC GSE113817.EZH2.hESC 359 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 191 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP hepatocyte ENCFF552DZB 1042 bp overlap
ChIP keratinocyte ENCFF070STK 506 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 549 bp overlap
ChIP neural cell ENCFF610EPB 401 bp overlap
ChIP neural progenitor cell ENCFF018MKA 1047 bp overlap
ChIP neural progenitor cell ENCFF472NFV 1047 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 371 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GATA6 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 263 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 325 bp overlap
GCM1 1 dataset
Motif DE_12h DE_12h-GCM1_MA0646.2 10 bp overlap
GCM2 1 dataset
Motif DE_12h DE_12h-GCM2_MA0767.2 8 bp overlap
GLIS2 1 dataset
Motif DE_12h DE_12h-GLIS2_MA0736.1 14 bp overlap
HES1 2 datasets
Motif DE_12h DE_12h-HES1_MA1099.3 8 bp overlap
Motif ES_0h ES_0h-HES1_MA1099.3 8 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 196 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 1028 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 837 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 939 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 1047 bp overlap
JUN 1 dataset
ChIP ESC S24-ESC-d0-JUN-exp1 342 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 292 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 114 bp overlap
KLF3 1 dataset
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
MYC 1 dataset
ChIP P493-6_24HR GSE125863.MYC.P493-6_24HR 298 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 494 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 434 bp overlap
NFYA 2 datasets
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
Motif ES_0h ES_0h-NFYA_MA0060.4 8 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR6A1 2 datasets
Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap
Motif ES_0h ES_0h-NR6A1_MA1541.2 14 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 86 bp overlap
PBX3 1 dataset
ChIP HEK293 ENCFF177BTM 437 bp overlap
PCGF2 1 dataset
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 260 bp overlap
POLR2A 3 datasets
ChIP PFSK-1 ENCFF576NIT 391 bp overlap
ChIP PFSK-1 ENCFF576NIT 189 bp overlap
ChIP spleen ENCFF706IUS 545 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 145 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 973 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 703 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 195 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 432 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 958 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Pgr 1 dataset
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
RAD21 1 dataset
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 321 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 343 bp overlap
RELA 1 dataset
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 169 bp overlap
REST 2 datasets
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
RING1 3 datasets
ChIP SYO-1_shCt GSE139053.RING1.SYO-1_shCt 295 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 607 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 230 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 774 bp overlap
ChIP H1 ENCFF239FFS 503 bp overlap
ChIP H1 ENCFF239FFS 451 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 574 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 579 bp overlap
RPA2_phospho 5 datasets
ChIP HeLa GSE108172.RPA2_phospho.HeLa 238 bp overlap
ChIP HeLa GSE108172.RPA2_phospho.HeLa 176 bp overlap
ChIP HeLa_shASF GSE108172.RPA2_phospho.HeLa_shASF 211 bp overlap
ChIP HeLa_shASF GSE108172.RPA2_phospho.HeLa_shASF 204 bp overlap
ChIP HeLa_shTOP1 GSE108172.RPA2_phospho.HeLa_shTOP1 219 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 118 bp overlap
SIN3A 2 datasets
ChIP PFSK-1 ENCFF218MAY 228 bp overlap
ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 111 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 251 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 270 bp overlap
SMC1 2 datasets
ChIP HCAEC GSE101921.SMC1.HCAEC 590 bp overlap
ChIP HCAEC GSE101921.SMC1.HCAEC 189 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 157 bp overlap
SREBP2 3 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 524 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 640 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 348 bp overlap
SS18 2 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 759 bp overlap
ChIP Aska-SS GSE108025.SS18.Aska-SS 157 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 236 bp overlap
SUZ12 11 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 382 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 1047 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 354 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 215 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 327 bp overlap
ChIP NT2/D1 ENCFF574SXS 359 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 574 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 1047 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 635 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 104 bp overlap
TCFL5 2 datasets
Motif DE_12h DE_12h-TCFL5_MA0632.3 8 bp overlap
Motif ES_0h ES_0h-TCFL5_MA0632.3 8 bp overlap
TFAP2C 4 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 141 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 246 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 107 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 545 bp overlap
TP53 1 dataset
ChIP SaOS-2 ERP002038.TP53.SaOS-2 272 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 184 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 265 bp overlap
ChIP HCT-116 GSE72622.TRIM28.HCT-116 199 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 468 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZMYND11 2 datasets
ChIP HeLa GSE51672.ZMYND11.HeLa 181 bp overlap
ChIP HeLa GSE51672.ZMYND11.HeLa 136 bp overlap
ZNF257 2 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF317 1 dataset
ChIP WTC11 ENCFF537KXI 357 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF574 1 dataset
Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap
ZNF675 1 dataset
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap