chr1 : 174,871,982 174,872,144
162 bp 87 TFs 1 linked gene
This 162 bp open chromatin element is linked to RABGAP1L and is bound by 87 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RABGAP1L 2.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:174,866,982 – 174,877,144
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 67 bp overlap
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 162 bp overlap
ARNT 1 dataset
ChIP K562 ENCFF291CXK 126 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 148 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 162 bp overlap
ATF2 3 datasets
ChIP GM12878 ENCSR000BQK.ATF2.GM12878 136 bp overlap
ChIP H1 ENCFF295GZO 162 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 162 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCFF037PYH 162 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 162 bp overlap
BCL11A 2 datasets
ChIP WA01 ENCSR000BIP.BCL11A.WA01 149 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 146 bp overlap
BCL6 5 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCL6.B-cell_GERMINAL_CENTER 131 bp overlap
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 162 bp overlap
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 159 bp overlap
ChIP OCI-Ly1 GSE107920.BCL6.OCI-Ly1 147 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 162 bp overlap
BRD2 4 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 162 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 111 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD2.MDA-MB-231_JQ1 160 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_rDNA 160 bp overlap
BRD4 11 datasets
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 162 bp overlap
ChIP GM15850_PA1_JQ1 GSE99402.BRD4.GM15850_PA1_JQ1 118 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 162 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 162 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 55 bp overlap
ChIP OCI-Ly1_DMSO GSE53601.BRD4.OCI-Ly1_DMSO 162 bp overlap
ChIP OCI-Ly1_JQ1 GSE53601.BRD4.OCI-Ly1_JQ1 88 bp overlap
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 162 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 162 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 162 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 130 bp overlap
CEBPB 2 datasets
ChIP Ishikawa ENCFF010USJ 162 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 161 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 162 bp overlap
ChIP H1 ENCFF126NLU 82 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 140 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 140 bp overlap
CREB1 1 dataset
ChIP GM12878 ENCSR000BUF.CREB1.GM12878 113 bp overlap
CREBBP 3 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 136 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 162 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 123 bp overlap
CREM 1 dataset
ChIP GM12878 ENCSR839XZU.CREM.GM12878 118 bp overlap
E4F1 2 datasets
ChIP K-562 ENCSR731LHZ.E4F1.K-562 162 bp overlap
ChIP K562 ENCFF622HMZ 162 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 162 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 162 bp overlap
EP300 4 datasets
ChIP Ishikawa ENCFF364ZWT 162 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 157 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 162 bp overlap
ChIP hESC GSE17917.EP300.hESC 162 bp overlap
ESR1 2 datasets
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 162 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_3 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_3 153 bp overlap
FOXA1 10 datasets
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 58 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 88 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 51 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 107 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 149 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 95 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 162 bp overlap
ChIP breast-cancer_heregulin-ICI GSE101407.FOXA1.breast-cancer_heregulin-ICI 155 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 72 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 77 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 59 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 64 bp overlap
ChIP DE DE-FOXA2-1 111 bp overlap
ChIP DE DE-FOXA2-2 144 bp overlap
FOXM1 4 datasets
ChIP GM12878 ENCFF264DJE 162 bp overlap
ChIP GM12878 ENCSR000BRU.FOXM1.GM12878 159 bp overlap
ChIP Ishikawa ENCFF578VDD 162 bp overlap
ChIP Ishikawa ENCSR000BUS.FOXM1.Ishikawa 137 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 106 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 162 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-2 140 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 162 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 162 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 162 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 162 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 162 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 162 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 162 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 162 bp overlap
GRHL2 6 datasets
ChIP HBE GSE46194.GRHL2.HBE 162 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 162 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 162 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 162 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 162 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 162 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 150 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR197ALX.HDGF.K-562 162 bp overlap
ChIP K-562 ENCSR563YDA.HDGF.K-562 162 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 162 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 162 bp overlap
JUN 5 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 162 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 162 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 162 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 162 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 162 bp overlap
JUNB 3 datasets
ChIP GM12878 ENCFF667EJQ 82 bp overlap
ChIP GM12878 ENCFF667EJQ 162 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 162 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 109 bp overlap
KLF4 3 datasets
ChIP PDAC GSE64557.KLF4.PDAC 162 bp overlap
ChIP WA09 GSE105028.KLF4.WA09 127 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 146 bp overlap
MED1 2 datasets
ChIP OCI-Ly1 GSE53601.MED1.OCI-Ly1 162 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 162 bp overlap
MEF2B 2 datasets
ChIP DLBCL GSE110682.MEF2B.DLBCL 162 bp overlap
ChIP tonsil GSE110682.MEF2B.tonsil 162 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 136 bp overlap
MYCN 1 dataset
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 65 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 162 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 160 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 162 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 162 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 162 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 162 bp overlap
ChIP hESC GSE18292.NANOG.hESC 162 bp overlap
NFIC 3 datasets
ChIP GM12878 ENCFF259FWL 162 bp overlap
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 162 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 122 bp overlap
NIPBL 1 dataset
ChIP WA09 GSE105028.NIPBL.WA09 72 bp overlap
NKRF 1 dataset
ChIP K562 ENCFF815TQL 162 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 71 bp overlap
NR3C1 3 datasets
ChIP HCC1937 GSE152203.NR3C1.HCC1937 139 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 151 bp overlap
ChIP Ishikawa_Dex GSE109891.NR3C1.Ishikawa_Dex 98 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 162 bp overlap
POU5F1 8 datasets
ChIP GM23338 ENCFF333SNB 63 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 162 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 162 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 162 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 117 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 162 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 162 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 81 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 162 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 60 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 162 bp overlap
REST 1 dataset
ChIP WA01 ENCSR000BHM.REST.WA01 143 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 162 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 140 bp overlap
SCRT1 1 dataset
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap
SMAD3 1 dataset
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 148 bp overlap
SMARCA4 5 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 91 bp overlap
ChIP WA09 GSE105028.SMARCA4.WA09 162 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 116 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 162 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 162 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 162 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 162 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 162 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 80 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 162 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 162 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 158 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 162 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 162 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 162 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 162 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
STAT3 1 dataset
ChIP HCC1937 GSE152203.STAT3.HCC1937 162 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 162 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 145 bp overlap
TBP 3 datasets
ChIP H1 ENCFF859IIO 162 bp overlap
ChIP hESC GSE122298.TBP.hESC 162 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 141 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 162 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 162 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 162 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 128 bp overlap
TEAD1 3 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 162 bp overlap
ChIP WTC11 ENCFF502QUV 162 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 162 bp overlap
TEAD4 12 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 162 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 162 bp overlap
ChIP H1 ENCFF778PAX 162 bp overlap
ChIP Ishikawa ENCFF772OTG 162 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 162 bp overlap
ChIP MKN28 GSE44416.TEAD4.MKN28 162 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 162 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 162 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 162 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.TEAD4.PC-9_2DF_DMSO 162 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 150 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 158 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 162 bp overlap
WDR5 1 dataset
ChIP breast-cancer_shLuc GSE113279.WDR5.breast-cancer_shLuc 162 bp overlap
YAP1 1 dataset
ChIP MCF-10A GSE97972.YAP1.MCF-10A 152 bp overlap
YBX3 1 dataset
ChIP K562 ENCFF406DBA 162 bp overlap
YY1AP1 4 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 162 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.YY1AP1.PC-9_1DF_DMSO 162 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 162 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.YY1AP1.PC-9_2DF_DMSO 162 bp overlap
ZBED1 1 dataset
ChIP GM12878 ENCFF007OSW 162 bp overlap
ZNF136 1 dataset
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
ZNF143 1 dataset
ChIP WA09 GSE105028.ZNF143.WA09 162 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap