chr9 : 7,967,625 – 7,968,256
631 bp 136 TFs 1 linked gene
This 631 bp open chromatin element is linked to ENSG00000231902 and is bound by 136 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000231902 6.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:7,962,625 – 7,973,256
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
136 transcription factors
Source
Cell type
ALX3 1 dataset
Motif ES_0h ES_0h-ALX3_MA0634.2 6 bp overlap
AR 4 datasets
ChIP VCaP GSE148358.AR.VCaP 208 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 228 bp overlap
ChIP prostate_1730_T GSE130408.AR.prostate_1730_T 191 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 187 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 577 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 631 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 134 bp overlap
BCL11A 2 datasets
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 134 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 151 bp overlap
BRCA1 1 dataset
ChIP H1 ENCFF288NOI 301 bp overlap
BRD4 4 datasets
ChIP MV4-11_DMSO GSE71776.BRD4.MV4-11_DMSO 133 bp overlap
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 205 bp overlap
ChIP SUM185_DMSO GSE63581.BRD4.SUM185_DMSO 250 bp overlap
ChIP hESC GSE33281.BRD4.hESC 66 bp overlap
CDX2 3 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 309 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 466 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 509 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 136 bp overlap
CTNNB1 2 datasets
ChIP LS180 GSE31939.CTNNB1.LS180 132 bp overlap
ChIP LS180_125 GSE31939.CTNNB1.LS180_125 132 bp overlap
DRGX 1 dataset
Motif ES_0h ES_0h-DRGX_MA1481.2 6 bp overlap
Dlx2 1 dataset
Motif ES_0h ES_0h-Dlx2_MA0885.3 8 bp overlap
Dlx5 1 dataset
Motif ES_0h ES_0h-Dlx5_MA1476.3 8 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 241 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 138 bp overlap
ELK1::HOXA1 1 dataset
Motif ES_0h ES_0h-ELK1HOXA1_MA1931.1 14 bp overlap
EMX1 1 dataset
Motif ES_0h ES_0h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif ES_0h ES_0h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif ES_0h ES_0h-EN1_MA0027.3 6 bp overlap
EN2 1 dataset
Motif ES_0h ES_0h-EN2_MA0642.3 7 bp overlap
EP300 1 dataset
ChIP transverse colon ENCFF258CAS 91 bp overlap
ERG 2 datasets
ChIP VCaP GSE28950.ERG.VCaP 154 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 316 bp overlap
ESX1 1 dataset
Motif ES_0h ES_0h-ESX1_MA0644.3 7 bp overlap
ETV5::HOXA2 1 dataset
Motif ES_0h ES_0h-ETV5HOXA2_MA1948.2 12 bp overlap
EVX1 1 dataset
Motif ES_0h ES_0h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif ES_0h ES_0h-EVX2_MA0888.2 6 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FLI1::DRGX 1 dataset
Motif ES_0h ES_0h-FLI1DRGX_MA1949.2 14 bp overlap
FOXA1 6 datasets
ChIP LS180 GSE140533.FOXA1.LS180 61 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 62 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 231 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.FOXA1.primary-breast-cancer_B1_DSG 347 bp overlap
ChIP prostate_2483_T GSE130408.FOXA1.prostate_2483_T 202 bp overlap
ChIP prostate_P13_T GSE130408.FOXA1.prostate_P13_T 169 bp overlap
GABPA 2 datasets
ChIP HL-60 ENCFF515BEZ 179 bp overlap
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 133 bp overlap
GATA3 1 dataset
ChIP T-47D ENCSR000BMX.GATA3.T-47D 168 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 351 bp overlap
GBX1 1 dataset
Motif ES_0h ES_0h-GBX1_MA0889.2 7 bp overlap
GRHL2 9 datasets
ChIP HBE GSE46194.GRHL2.HBE 257 bp overlap
ChIP LNCaP GSE80256.GRHL2.LNCaP 280 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 283 bp overlap
ChIP MCF-7 GSE99680.GRHL2.MCF-7 214 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 378 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 335 bp overlap
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 233 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 293 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 370 bp overlap
GSX1 1 dataset
Motif ES_0h ES_0h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif ES_0h ES_0h-GSX2_MA0893.3 7 bp overlap
HNF4A 2 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 134 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 220 bp overlap
HOXA1 1 dataset
Motif ES_0h ES_0h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif ES_0h ES_0h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif ES_0h ES_0h-HOXA3_MA2119.1 7 bp overlap
HOXA5 1 dataset
Motif ES_0h ES_0h-HOXA5_MA0158.2 8 bp overlap
HOXA6 1 dataset
Motif ES_0h ES_0h-HOXA6_MA1497.2 7 bp overlap
HOXB1 1 dataset
Motif ES_0h ES_0h-HOXB1_MA2093.1 7 bp overlap
HOXB13 11 datasets
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 86 bp overlap
ChIP prostate_2078_T GSE130408.HOXB13.prostate_2078_T 338 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 235 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 144 bp overlap
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 305 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 226 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 202 bp overlap
ChIP prostate_P23 GSE130408.HOXB13.prostate_P23 197 bp overlap
ChIP prostate_P27 GSE130408.HOXB13.prostate_P27 237 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 226 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 226 bp overlap
HOXB2 1 dataset
Motif ES_0h ES_0h-HOXB2_MA0902.3 6 bp overlap
HOXB2::ELK1 1 dataset
Motif ES_0h ES_0h-HOXB2ELK1_MA1957.1 14 bp overlap
HOXB3 1 dataset
Motif ES_0h ES_0h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif ES_0h ES_0h-HOXB5_MA0904.3 6 bp overlap
HOXB6 1 dataset
Motif ES_0h ES_0h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif ES_0h ES_0h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif ES_0h ES_0h-HOXB8_MA1502.2 7 bp overlap
HOXC8 1 dataset
Motif ES_0h ES_0h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif ES_0h ES_0h-HOXD3_MA0912.2 8 bp overlap
HOXD8 1 dataset
Motif ES_0h ES_0h-HOXD8_MA0910.3 7 bp overlap
Hand1::Tcf3 1 dataset
Motif ES_0h ES_0h-Hand1Tcf3_MA0092.2 9 bp overlap
ISX 1 dataset
Motif ES_0h ES_0h-ISX_MA0654.2 6 bp overlap
JMJD1C 2 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 136 bp overlap
ChIP NB4 GSE63484.JMJD1C.NB4 61 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 213 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 242 bp overlap
LBX1 1 dataset
Motif ES_0h ES_0h-LBX1_MA0618.2 7 bp overlap
LHX5 1 dataset
Motif ES_0h ES_0h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif ES_0h ES_0h-LHX6_MA0658.2 8 bp overlap
LHX9 1 dataset
Motif ES_0h ES_0h-LHX9_MA0701.3 7 bp overlap
LMX1A 1 dataset
Motif ES_0h ES_0h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif ES_0h ES_0h-LMX1B_MA0703.3 8 bp overlap
Lhx1 1 dataset
Motif ES_0h ES_0h-Lhx1_MA1518.3 10 bp overlap
Lhx4 1 dataset
Motif ES_0h ES_0h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif ES_0h ES_0h-Lhx8_MA0705.2 6 bp overlap
MEOX1 1 dataset
Motif ES_0h ES_0h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif ES_0h ES_0h-MEOX2_MA0706.2 7 bp overlap
MIXL1 1 dataset
Motif ES_0h ES_0h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif ES_0h ES_0h-MNX1_MA0707.3 6 bp overlap
MYC 1 dataset
ChIP DLD-1_MYC-activated GSE117240.MYC.DLD-1_MYC-activated 157 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 420 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 302 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 342 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 92 bp overlap
NKX6-2 1 dataset
Motif ES_0h ES_0h-NKX6-2_MA0675.2 6 bp overlap
NOTO 1 dataset
Motif ES_0h ES_0h-NOTO_MA0710.2 7 bp overlap
NR1I3 1 dataset
Motif ES_0h ES_0h-NR1I3_MA1534.2 8 bp overlap
NR3C1 1 dataset
ChIP HCC1937 GSE152203.NR3C1.HCC1937 189 bp overlap
Nr2F6 1 dataset
Motif ES_0h ES_0h-Nr2F6_MA0728.1 15 bp overlap
ONECUT1 1 dataset
Motif ES_0h ES_0h-ONECUT1_MA0679.3 9 bp overlap
PAX4 1 dataset
Motif ES_0h ES_0h-PAX4_MA0068.2 8 bp overlap
PBX1 1 dataset
Motif ES_0h ES_0h-PBX1_MA0070.2 9 bp overlap
PDX1 2 datasets
Motif ES_0h ES_0h-PDX1_MA0132.3 6 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 218 bp overlap
PHOX2A 1 dataset
Motif ES_0h ES_0h-PHOX2A_MA0713.1 11 bp overlap
POLR2A 2 datasets
ChIP transverse colon ENCFF607LKE 133 bp overlap
ChIP transverse colon ENCFF610RWV 273 bp overlap
POU2F1::SOX2 1 dataset
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F3 1 dataset
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU4F2 1 dataset
Motif ES_0h ES_0h-POU4F2_MA0683.2 15 bp overlap
POU5F1 2 datasets
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 248 bp overlap
POU6F1 1 dataset
Motif ES_0h ES_0h-POU6F1_MA0628.2 6 bp overlap
POU6F2 1 dataset
Motif ES_0h ES_0h-POU6F2_MA0793.2 9 bp overlap
PRRX1 1 dataset
Motif ES_0h ES_0h-PRRX1_MA0716.2 6 bp overlap
PRRX2 1 dataset
Motif ES_0h ES_0h-PRRX2_MA0075.4 7 bp overlap
Pou5f1::Sox2 1 dataset
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 1 dataset
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 94 bp overlap
RARA 1 dataset
Motif ES_0h ES_0h-RARA_MA0729.1 18 bp overlap
RAX2 1 dataset
Motif ES_0h ES_0h-RAX2_MA0717.2 6 bp overlap
RELA 2 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 237 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 129 bp overlap
REST 5 datasets
ChIP colorectal-cancer_CRC121_dissociated GSE112555.REST.colorectal-cancer_CRC121_dissociated 225 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 528 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 631 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 560 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 565 bp overlap
RORA 1 dataset
Motif ES_0h ES_0h-RORA_MA0072.2 11 bp overlap
RXR 2 datasets
ChIP LS180_125 GSE31939.RXR.LS180_125 131 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 159 bp overlap
Rarb 1 dataset
Motif ES_0h ES_0h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif ES_0h ES_0h-Rarg_MA0859.2 15 bp overlap
SHOX 1 dataset
Motif ES_0h ES_0h-SHOX_MA0630.2 6 bp overlap
SMAD3 3 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 361 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 285 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 308 bp overlap
SMARCE1 1 dataset
ChIP HMLE-Twist-ER_125nM_4OHT GSE96933.SMARCE1.HMLE-Twist-ER_125nM_4OHT 185 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 131 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 318 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 159 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 184 bp overlap
SPI1 10 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 111 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 149 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 80 bp overlap
ChIP HL-60 ENCFF645GBT 154 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 123 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 136 bp overlap
ChIP primary-monocyte_LPS-4h_donorO GSE128834.SPI1.primary-monocyte_LPS-4h_donorO 114 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 77 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 107 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 87 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 143 bp overlap
STAT3 4 datasets
ChIP A-137 GSE85579.STAT3.A-137 284 bp overlap
ChIP HCC1187 GSE152203.STAT3.HCC1187 233 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 387 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 310 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 264 bp overlap
Shox2 1 dataset
Motif ES_0h ES_0h-Shox2_MA0720.2 6 bp overlap
Spi1 1 dataset
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
TCF4 2 datasets
ChIP LS180 GSE31939.TCF4.LS180 176 bp overlap
ChIP LS180_125 GSE31939.TCF4.LS180_125 153 bp overlap
TEAD1 2 datasets
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
TEAD2 2 datasets
Motif ES_0h ES_0h-TEAD2_MA1121.2 7 bp overlap
Motif ES_0h ES_0h-TEAD2_MA1121.2 7 bp overlap
TEAD3 2 datasets
Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap
Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap
TEAD4 3 datasets
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
TFAP2A 2 datasets
Motif ES_0h ES_0h-TFAP2A_MA0810.2 11 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 146 bp overlap
TFAP2B 1 dataset
Motif ES_0h ES_0h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 2 datasets
Motif ES_0h ES_0h-TFAP2C_MA0524.3 11 bp overlap
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 259 bp overlap
TLX2 1 dataset
Motif ES_0h ES_0h-TLX2_MA1577.2 6 bp overlap
UNCX 1 dataset
Motif ES_0h ES_0h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif ES_0h ES_0h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif ES_0h ES_0h-VAX2_MA0723.3 6 bp overlap
VDR 1 dataset
ChIP LS180_125 GSE31939.VDR.LS180_125 187 bp overlap
VSX1 1 dataset
Motif ES_0h ES_0h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif ES_0h ES_0h-VSX2_MA0726.2 7 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZNF331 1 dataset
Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap
ZNF382 1 dataset
Motif ES_0h ES_0h-ZNF382_MA1594.1 24 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 470 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 241 bp overlap
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