chr1 : 170,666,646 – 170,667,067
421 bp 86 TFs 2 linked genes
This 421 bp open chromatin element is linked to ENSG00000271811 and PRRX1 and is bound by 86 transcription factors.
Linked Genes
2 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000271811 312 bp At TSS Proximity
PRRX1 3.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:170,661,646 – 170,672,067
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AR 3 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 135 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 239 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 207 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 421 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 193 bp overlap
BACH1 1 dataset
ChIP GM12878 ENCSR636MKU.BACH1.GM12878 266 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 290 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 288 bp overlap
BHLHE40 2 datasets
ChIP GM12878 ENCFF521IZR 338 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 165 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 216 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 150 bp overlap
BRD4 1 dataset
ChIP MCF-7 GSE55921.BRD4.MCF-7 81 bp overlap
CDK8 1 dataset
ChIP myometrium_PT886 GSE128230.CDK8.myometrium_PT886 109 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 342 bp overlap
CTCF 5 datasets
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 290 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 177 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 288 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 100 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 173 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 303 bp overlap
ChIP BLaER1 ENCFF335XTP 149 bp overlap
E2F6 5 datasets
ChIP H1 ENCFF785DWK 217 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 155 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 135 bp overlap
ChIP K562 ENCFF136LTS 278 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 342 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 274 bp overlap
EGR1 1 dataset
ChIP T-HESCs GSE141063.EGR1.T-HESCs 234 bp overlap
ESR1 1 dataset
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 272 bp overlap
EZH2 8 datasets
ChIP GM23338 ENCFF613YON 93 bp overlap
ChIP GM23338 ENCFF613YON 156 bp overlap
ChIP GM23338 ENCFF886DXX 153 bp overlap
ChIP H1 ENCFF232NZA 421 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 259 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 397 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 313 bp overlap
ChIP neural progenitor cell ENCFF472NFV 421 bp overlap
EZH2_phosphoT487 1 dataset
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 308 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 308 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 163 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 261 bp overlap
GATAD2B 1 dataset
ChIP GM12878 ENCSR828NCB.GATAD2B.GM12878 332 bp overlap
GRHL2 1 dataset
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 118 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 159 bp overlap
HIF1A 1 dataset
Motif DE_12h DE_12h-HIF1A_MA1106.2 6 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF824TGK 84 bp overlap
JARID2 5 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 421 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 289 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 421 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 317 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 421 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 220 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 191 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 146 bp overlap
L3MBTL2 1 dataset
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 261 bp overlap
MAX 5 datasets
ChIP H1 ENCFF914VQY 204 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 108 bp overlap
ChIP SK-N-SH ENCFF285LXR 162 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 291 bp overlap
ChIP WTC11 ENCFF223QFY 368 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 310 bp overlap
MED1 2 datasets
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 184 bp overlap
ChIP hMSC-TERT4_adipocyte-D1 GSE113253.MED1.hMSC-TERT4_adipocyte-D1 310 bp overlap
MED12 1 dataset
ChIP myometrium_PT886 GSE128230.MED12.myometrium_PT886 64 bp overlap
MITF 3 datasets
ChIP 501-mel GSE137522.MITF.501-mel 156 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 124 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 147 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 421 bp overlap
MLXIPL 1 dataset
Motif DE_12h DE_12h-MLXIPL_MA0664.2 8 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 211 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 236 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 416 bp overlap
NFATC3 1 dataset
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 229 bp overlap
NR3C1 2 datasets
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 80 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 221 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 350 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 313 bp overlap
OSR1 2 datasets
Motif DE_12h DE_12h-OSR1_MA1542.2 8 bp overlap
ChIP SK-N-SH ENCFF025PMY 234 bp overlap
OSR2 1 dataset
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 313 bp overlap
POLR2A 3 datasets
ChIP uterus ENCFF566ZPY 325 bp overlap
ChIP vagina ENCFF384GAB 408 bp overlap
ChIP vagina ENCFF384GAB 221 bp overlap
POU2F1 1 dataset
ChIP T-47D GSE148277.POU2F1.T-47D 98 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 107 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 200 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 259 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 76 bp overlap
RBBP5 1 dataset
ChIP H1 ENCFF905HFL 162 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 417 bp overlap
RNF2 4 datasets
ChIP H1 ENCFF239FFS 340 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 249 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 121 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 268 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 250 bp overlap
SIN3A 3 datasets
ChIP SK-N-SH ENCFF931NFD 272 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 150 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 200 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap
SIX2 1 dataset
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
SMARCA4 2 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 277 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 421 bp overlap
SMARCA5 1 dataset
ChIP GM12878 ENCSR706YUH.SMARCA5.GM12878 259 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 239 bp overlap
SMARCC1 3 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 104 bp overlap
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 220 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 136 bp overlap
SMC1 1 dataset
ChIP IMR-90_G GSE118494.SMC1.IMR-90_G 259 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 275 bp overlap
SRSF7 1 dataset
ChIP Hep-G2 GSE120104.SRSF7.Hep-G2 294 bp overlap
SSRP1 1 dataset
ChIP hiF-T GSE98758.SSRP1.hiF-T 287 bp overlap
SUPT16H 1 dataset
ChIP hiF-T GSE98758.SUPT16H.hiF-T 395 bp overlap
SUZ12 2 datasets
ChIP H1 ENCFF881NFR 421 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 421 bp overlap
TAF1 2 datasets
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 144 bp overlap
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 159 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 193 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 116 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 188 bp overlap
UBTF 1 dataset
ChIP GM12878 ENCSR459FTB.UBTF.GM12878 57 bp overlap
USF1 4 datasets
ChIP H1 ENCFF090WVU 121 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 121 bp overlap
ChIP SK-N-SH ENCSR000BTZ.USF1.SK-N-SH 60 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 146 bp overlap
ZBTB33 1 dataset
ChIP GM12878 ENCSR542FLV.ZBTB33.GM12878 322 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 340 bp overlap
ZNF232 1 dataset
ChIP WTC11 ENCFF901BGD 279 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF417 1 dataset
Motif DE_12h DE_12h-ZNF417_MA1727.2 7 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 219 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF687 2 datasets
ChIP GM12878 ENCFF233SGE 309 bp overlap
ChIP GM12878 ENCSR859FDL.ZNF687.GM12878 274 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
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