chr1 : 170,662,985 170,663,591
606 bp 84 TFs 2 linked genes
This 606 bp open chromatin element is linked to PRRX1 and ENSG00000271811 and is bound by 84 transcription factors.
Linked Genes
2 genes
Distance
Gene Expression Dist. to TSS Distance Link type
PRRX1 at TSS At TSS Proximity
ENSG00000271811 3.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:170,657,985 – 170,668,591
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 338 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 354 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 106 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 354 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 256 bp overlap
BHLHE40 2 datasets
ChIP GM12878 ENCFF010ZUU 126 bp overlap
ChIP GM12878 ENCFF521IZR 94 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 256 bp overlap
BRD3 1 dataset
ChIP U-87MG_GBM GSE99171.BRD3.U-87MG_GBM 181 bp overlap
BRD4 4 datasets
ChIP COLO-320 GSE73319.BRD4.COLO-320 364 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 185 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 475 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 370 bp overlap
CBX7 2 datasets
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 606 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.CBX7.HEK293T_PCGF2fl_OHT 310 bp overlap
CDK8 3 datasets
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 200 bp overlap
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 54 bp overlap
ChIP leiomyoma_PT967 GSE128230.CDK8.leiomyoma_PT967 61 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 306 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 579 bp overlap
CTCF 20 datasets
ChIP BJ ENCSR000DQI.CTCF.BJ 227 bp overlap
ChIP SK-N-SH ENCFF575DMG 372 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 364 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 212 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 365 bp overlap
ChIP chondrocyte ENCFF134ORZ 339 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 133 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 217 bp overlap
ChIP fibroblast_AORTIC_ADVENTITIA ENCSR000DPY.CTCF.fibroblast_AORTIC_ADVENTITIA 105 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DWQ.CTCF.fibroblast_FORESKIN 183 bp overlap
ChIP fibroblast_GINGIVA ENCSR000DPS.CTCF.fibroblast_GINGIVA 188 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 362 bp overlap
ChIP osteoblast ENCFF491ZJZ 375 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 300 bp overlap
ChIP testis ENCSR981CID.CTCF.testis 176 bp overlap
ChIP thoracic aorta ENCFF012WJQ 384 bp overlap
ChIP thoracic aorta ENCFF012WJQ 158 bp overlap
ChIP tibial-nerve ENCSR875NEW.CTCF.tibial-nerve 197 bp overlap
ChIP uterus ENCSR392SFJ.CTCF.uterus 157 bp overlap
ChIP uterus ENCSR684PGO.CTCF.uterus 188 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF167CZS 61 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 175 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 223 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 208 bp overlap
EP300 2 datasets
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 298 bp overlap
ChIP tibial nerve ENCFF346AYA 279 bp overlap
EZH2 8 datasets
ChIP GM23338 ENCFF613YON 277 bp overlap
ChIP GM23338 ENCFF613YON 164 bp overlap
ChIP H1 ENCFF232NZA 152 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 459 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 288 bp overlap
ChIP hepatocyte ENCFF552DZB 116 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 234 bp overlap
ChIP neural progenitor cell ENCFF472NFV 378 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 56 bp overlap
HNRNPK 8 datasets
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 156 bp overlap
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 204 bp overlap
ChIP HepG2 ENCFF493GNS 137 bp overlap
ChIP HepG2 ENCFF493GNS 336 bp overlap
ChIP HepG2 ENCFF826MXP 134 bp overlap
ChIP HepG2 ENCFF826MXP 333 bp overlap
ChIP K562 ENCFF954RNO 61 bp overlap
ChIP K562 ENCFF954RNO 270 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF753XDO 256 bp overlap
IKZF2 4 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
ChIP GM12878 ENCFF238LYK 377 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 153 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 292 bp overlap
JARID2 1 dataset
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 248 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 206 bp overlap
KDM5B 2 datasets
ChIP SUM159 GSE46055.KDM5B.SUM159 160 bp overlap
ChIP SUM185 GSE46055.KDM5B.SUM185 140 bp overlap
MAX 1 dataset
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 51 bp overlap
MAZ 2 datasets
ChIP HEK293 ENCFF994GSG 175 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 321 bp overlap
MED1 11 datasets
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 210 bp overlap
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 405 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 385 bp overlap
ChIP hMSC-TERT4_adipocyte-D1 GSE113253.MED1.hMSC-TERT4_adipocyte-D1 307 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 449 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 78 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 376 bp overlap
ChIP hMSC-TERT4_osteoblast-D1 GSE113253.MED1.hMSC-TERT4_osteoblast-D1 363 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 342 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 64 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 185 bp overlap
MED12 4 datasets
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 61 bp overlap
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 62 bp overlap
ChIP leiomyoma_PT967 GSE128230.MED12.leiomyoma_PT967 102 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 124 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 606 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 307 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 158 bp overlap
MTF2 1 dataset
ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 177 bp overlap
NANOG 2 datasets
ChIP WA01 ENCSR000BMT.NANOG.WA01 186 bp overlap
ChIP hESC GSE18292.NANOG.hESC 104 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 417 bp overlap
NR3C1 1 dataset
ChIP breast_tumor_Male_1 GSE104399.NR3C1.breast_tumor_Male_1 314 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 293 bp overlap
PCBP2 3 datasets
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 290 bp overlap
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 125 bp overlap
ChIP HepG2 ENCFF033VWK 343 bp overlap
PCGF2 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 606 bp overlap
PHC1 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PHC1.HEK293T_PCGF2fl 469 bp overlap
POLR2A 8 datasets
ChIP IMR-90 ENCFF672YWV 559 bp overlap
ChIP IMR-90 ENCFF672YWV 286 bp overlap
ChIP SK-N-MC ENCFF088IVG 439 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 502 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 244 bp overlap
ChIP lower leg skin ENCFF058ULB 346 bp overlap
ChIP vagina ENCFF216BYP 285 bp overlap
ChIP vagina ENCFF305NWS 53 bp overlap
POU5F1 1 dataset
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 464 bp overlap
PRDM1 2 datasets
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
ChIP HEK293 ENCFF302TBP 112 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 606 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 87 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 125 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 253 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 348 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 154 bp overlap
RELA 11 datasets
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 213 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 123 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 142 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 265 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 77 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 184 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 142 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 173 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 55 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 69 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 77 bp overlap
RNF2 9 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 276 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.RNF2.HEK293T_PCGF1352fl 316 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.RNF2.HEK293T_PCGF1356fl 533 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.RNF2.HEK293T_PCGF1356fl_OHT 579 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.RNF2.HEK293T_PCGF135fl 479 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.RNF2.HEK293T_PCGF135fl_OHT 486 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.RNF2.HEK293T_PCGF2fl 541 bp overlap
ChIP HEK293T_RING1Bfl GSE119618.RNF2.HEK293T_RING1Bfl 395 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 244 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 69 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 340 bp overlap
SMARCA2 1 dataset
ChIP NPC_R1159Q_ab GSE122631.SMARCA2.NPC_R1159Q_ab 221 bp overlap
SMARCA4 6 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 242 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 403 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 283 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 214 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 320 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 159 bp overlap
SMARCC1 3 datasets
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 485 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 165 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 308 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 338 bp overlap
ChIP hESC GSE18292.SOX2.hESC 102 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 364 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 509 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 88 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
SS18 5 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 77 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 447 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 143 bp overlap
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 303 bp overlap
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 147 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 302 bp overlap
SUZ12 12 datasets
ChIP H1 ENCFF881NFR 149 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.SUZ12.HEK293T_PCGF1352fl 570 bp overlap
ChIP HEK293T_PCGF1352fl_OHT GSE119618.SUZ12.HEK293T_PCGF1352fl_OHT 541 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 584 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.SUZ12.HEK293T_PCGF1356fl_OHT 606 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 585 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 592 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 593 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 214 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 427 bp overlap
ChIP NT2/D1 ENCFF574SXS 274 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 172 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TCF12 4 datasets
ChIP H1 ENCFF203EBH 155 bp overlap
ChIP SK-N-SH ENCFF147AHB 391 bp overlap
ChIP SK-N-SH ENCFF147AHB 220 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 250 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 196 bp overlap
YY1 2 datasets
ChIP SK-N-SH ENCFF087JSD 404 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 317 bp overlap
ZNF24 1 dataset
ChIP GM12878 ENCFF688STO 81 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 107 bp overlap
ZNF341 1 dataset
ChIP HEK293 GSE76494.ZNF341.HEK293 272 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 266 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 329 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 215 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 304 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 251 bp overlap
ZNF596 2 datasets
ChIP HEK293 ENCFF854MGB 242 bp overlap
ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 256 bp overlap