chr8 : 38,531,267 38,531,524
257 bp 86 TFs 1 linked gene
This 257 bp open chromatin element is linked to LINC03042 and is bound by 86 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC03042 2.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr8:38,526,267 – 38,536,524
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 257 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 90 bp overlap
ARID1A 2 datasets
ChIP HAP1 GSE108387.ARID1A.HAP1 247 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 257 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 257 bp overlap
ChIP H1 ENCFF399KAM 114 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 257 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 168 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 253 bp overlap
BAF155 1 dataset
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 66 bp overlap
BAP1 3 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 242 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 257 bp overlap
ChIP UM-RC-6_empty-vector GSE101987.BAP1.UM-RC-6_empty-vector 257 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 256 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 247 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 163 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 257 bp overlap
BRD4 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 257 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 257 bp overlap
CEBPB 3 datasets
ChIP H1 ENCFF871PTR 213 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 77 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 164 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 257 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 257 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 257 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 257 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 86 bp overlap
CTCF 2 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 244 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 156 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 212 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 173 bp overlap
ChIP hESC GSE17917.EP300.hESC 257 bp overlap
ESR1 5 datasets
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 83 bp overlap
ChIP breast_tumor_Female_1 GSE104399.ESR1.breast_tumor_Female_1 257 bp overlap
ChIP breast_tumor_Female_2 GSE104399.ESR1.breast_tumor_Female_2 257 bp overlap
ChIP breast_tumor_Male_9 GSE104399.ESR1.breast_tumor_Male_9 257 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.ESR1.primary-breast-cancer_B1_DSG 257 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 106 bp overlap
FOS 2 datasets
ChIP MCF-7 ENCFF282FWZ 145 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 127 bp overlap
FOXA1 40 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 54 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 74 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 113 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 74 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 60 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 51 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 65 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 60 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 220 bp overlap
ChIP LNCaP_GSK GSE148926.FOXA1.LNCaP_GSK 56 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 257 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 74 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 257 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 74 bp overlap
ChIP ZR-75-1_estrogen_ab1 GSE112969.FOXA1.ZR-75-1_estrogen_ab1 86 bp overlap
ChIP ZR-75-1_estrogen_ab1 GSE112969.FOXA1.ZR-75-1_estrogen_ab1 59 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 257 bp overlap
ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 257 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 257 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 97 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 81 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 123 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 57 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 59 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 257 bp overlap
ChIP breast-cancer_Veh-131 GSE128018.FOXA1.breast-cancer_Veh-131 257 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 257 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 257 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 257 bp overlap
ChIP breast-cancer_heregulin-ICI GSE101407.FOXA1.breast-cancer_heregulin-ICI 257 bp overlap
ChIP breast_tumor_Female_1 GSE104399.FOXA1.breast_tumor_Female_1 257 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 257 bp overlap
ChIP breast_tumor_Female_3 GSE104399.FOXA1.breast_tumor_Female_3 257 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 103 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 257 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 257 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.FOXA1.primary-breast-cancer_B1_DSG 257 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 257 bp overlap
ChIP primary-breast-cancer_B4_DSG GSE114737.FOXA1.primary-breast-cancer_B4_DSG 54 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 57 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 230 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 257 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 257 bp overlap
GATA6 2 datasets
Motif ES_0h ES_0h-GATA6_MA1104.3 8 bp overlap
ChIP foregut GSE117136.GATA6.foregut 206 bp overlap
GLIS1 1 dataset
Motif ES_0h ES_0h-GLIS1_MA0735.2 15 bp overlap
GLIS2 1 dataset
Motif ES_0h ES_0h-GLIS2_MA0736.1 14 bp overlap
GLIS3 1 dataset
Motif ES_0h ES_0h-GLIS3_MA0737.1 14 bp overlap
Gata3 1 dataset
Motif ES_0h ES_0h-Gata3_MA0037.5 8 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 257 bp overlap
ChIP H1 ENCFF939VKA 228 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 113 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 257 bp overlap
HOXB13 2 datasets
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 257 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 87 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 257 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 257 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 257 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 257 bp overlap
KLF11 1 dataset
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF16 1 dataset
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF4 4 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 143 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 257 bp overlap
ChIP WA09 GSE105028.KLF4.WA09 151 bp overlap
ChIP WIBR3 GSE130417.KLF4.WIBR3 141 bp overlap
KLF9 2 datasets
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 129 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 257 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 257 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 231 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 257 bp overlap
ChIP H1 ENCFF747ZPQ 239 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 257 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 257 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 251 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 257 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 257 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 257 bp overlap
ChIP hESC GSE18292.NANOG.hESC 257 bp overlap
ChIP hESC GSE20650.NANOG.hESC 233 bp overlap
NCAPH2 2 datasets
ChIP RMG-I GSE120058.NCAPH2.RMG-I 257 bp overlap
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 257 bp overlap
NIPBL 1 dataset
ChIP WA09 GSE105028.NIPBL.WA09 211 bp overlap
NR3C1 2 datasets
ChIP breast_tumor_Male_21 GSE104399.NR3C1.breast_tumor_Male_21 151 bp overlap
ChIP breast_tumor_Male_9 GSE104399.NR3C1.breast_tumor_Male_9 257 bp overlap
Nr2e1 1 dataset
Motif ES_0h ES_0h-Nr2e1_MA0676.1 9 bp overlap
OSR2 1 dataset
Motif ES_0h ES_0h-OSR2_MA1646.2 8 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 194 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 257 bp overlap
POU5F1 9 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 126 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 257 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 257 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 257 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 257 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 151 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 257 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 257 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 257 bp overlap
PRDM14 2 datasets
ChIP hESC GSE22767.PRDM14.hESC 257 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 140 bp overlap
Prdm4 1 dataset
Motif ES_0h ES_0h-Prdm4_MA1647.3 11 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 257 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 257 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 257 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 226 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 114 bp overlap
RBPJ 1 dataset
ChIP MDA-MB-157 GSE116868.RBPJ.MDA-MB-157 138 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 257 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 176 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 154 bp overlap
SMARCA4 5 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 257 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 110 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 61 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 257 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 257 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 257 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 257 bp overlap
SMARCC1 4 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 217 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 149 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 257 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 257 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 95 bp overlap
SOX2 6 datasets
ChIP HNSC GSE69479.SOX2.HNSC 257 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 101 bp overlap
ChIP hESC GSE18292.SOX2.hESC 86 bp overlap
ChIP hESC GSE69479.SOX2.hESC 233 bp overlap
ChIP hESC GSE18292.SOX2.hESC 77 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 257 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 257 bp overlap
SS18 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 58 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 169 bp overlap
STAT3 1 dataset
ChIP BT-474 GSE152203.STAT3.BT-474 181 bp overlap
Sox6 1 dataset
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Stat6 1 dataset
Motif ES_0h ES_0h-Stat6_MA0520.2 10 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 82 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 257 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 257 bp overlap
TEAD4 1 dataset
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 257 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 257 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 198 bp overlap
TRPS1 1 dataset
Motif ES_0h ES_0h-TRPS1_MA1970.2 8 bp overlap
VEZF1 1 dataset
Motif ES_0h ES_0h-VEZF1_MA1578.2 6 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 132 bp overlap
ZBED4 1 dataset
Motif ES_0h ES_0h-ZBED4_MA2328.1 10 bp overlap
ZIC5 1 dataset
Motif ES_0h ES_0h-ZIC5_MA1584.2 15 bp overlap
ZIM3 1 dataset
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 154 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 172 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 214 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 256 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 179 bp overlap
ZNF558 1 dataset
Motif ES_0h ES_0h-ZNF558_MA2335.1 29 bp overlap
ZNF740 1 dataset
Motif ES_0h ES_0h-ZNF740_MA0753.3 10 bp overlap
ZNF766 1 dataset
Motif ES_0h ES_0h-ZNF766_MA2098.1 9 bp overlap
ZNF768 1 dataset
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
ZNF85 1 dataset
Motif ES_0h ES_0h-ZNF85_MA1720.2 12 bp overlap