chr7 : 19,145,550 – 19,146,179

629 bp 98 TFs 2 linked genes

This 629 bp open chromatin element is linked to FERD3L and ENSG00000229533 and is bound by 98 transcription factors.

Linked Genes

2 genes

Gene	Expression	Dist. to TSS	Distance	Link type
FERD3L		129 bp	At TSS	Proximity
ENSG00000229533		1.3 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

98 transcription factors

APC 1 dataset

ChIP HCT-116 GSE103894.APC.HCT-116 334 bp overlap

ARNT::HIF1A 1 dataset

Motif ES_0h ES_0h-ARNTHIF1A_MA0259.2 5 bp overlap

ASH2L 3 datasets

ChIP H1 ENCFF399KAM 629 bp overlap

ChIP H1 ENCFF399KAM 431 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 605 bp overlap

ATF6 1 dataset

Motif ES_0h ES_0h-ATF6_MA1466.2 13 bp overlap

ATOH7 1 dataset

Motif ES_0h ES_0h-ATOH7_MA1468.1 10 bp overlap

Arid3a 1 dataset

Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap

Atoh1 1 dataset

Motif ES_0h ES_0h-Atoh1_MA1467.3 7 bp overlap

BCOR 1 dataset

ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 251 bp overlap

BRD1 1 dataset

ChIP HUES-64 GSE104059.BRD1.HUES-64 444 bp overlap

CHD1 1 dataset

ChIP WA01 ENCSR000AQK.CHD1.WA01 629 bp overlap

CHD7 2 datasets

ChIP H1 ENCFF126NLU 305 bp overlap

ChIP WA01 ENCSR000AVA.CHD7.WA01 391 bp overlap

CHD8 1 dataset

ChIP T-47D GSE62428.CHD8.T-47D 191 bp overlap

CREB3 1 dataset

Motif ES_0h ES_0h-CREB3_MA0638.2 12 bp overlap

CREB3L1 1 dataset

Motif ES_0h ES_0h-CREB3L1_MA0839.2 13 bp overlap

CREB3L4 1 dataset

Motif ES_0h ES_0h-CREB3L4_MA1474.2 10 bp overlap

CTBP2 2 datasets

ChIP H1 ENCFF329MAX 509 bp overlap

ChIP WA01 ENCSR000EUO.CTBP2.WA01 344 bp overlap

CTCF 4 datasets

ChIP H1 ENCFF230QSV 165 bp overlap

ChIP H1 ENCFF764RHO 277 bp overlap

ChIP WA01 ENCSR000DLK.CTCF.WA01 146 bp overlap

ChIP endodermal cell ENCFF471YCZ 455 bp overlap

CTNNB1 1 dataset

ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 72 bp overlap

E2F6 1 dataset

ChIP WA01 ENCSR000BSI.E2F6.WA01 357 bp overlap

ERF::HOXB13 1 dataset

Motif ES_0h ES_0h-ERFHOXB13_MA1937.2 13 bp overlap

ETV2::DRGX 1 dataset

Motif ES_0h ES_0h-ETV2DRGX_MA1940.2 12 bp overlap

ETV5::HOXA2 1 dataset

Motif ES_0h ES_0h-ETV5HOXA2_MA1948.2 12 bp overlap

EZH2 9 datasets

ChIP GM23338 ENCFF613YON 314 bp overlap

ChIP H1 ENCFF232NZA 629 bp overlap

ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 406 bp overlap

ChIP LNCaP GSE39459.EZH2.LNCaP 308 bp overlap

ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 174 bp overlap

ChIP neural cell ENCFF610EPB 259 bp overlap

ChIP neural progenitor cell ENCFF018MKA 188 bp overlap

ChIP neural progenitor cell ENCFF472NFV 629 bp overlap

EZH2_phosphoT487 1 dataset

ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 148 bp overlap

FOXD2 1 dataset

Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap

FOXE1 1 dataset

Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap

GATA6 5 datasets

ChIP DE_D1 S09-DE-d1-GATA6-exp1 256 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 221 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 309 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 550 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 286 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 310 bp overlap

GRHL2 1 dataset

ChIP LNCaP GSE80256.GRHL2.LNCaP 201 bp overlap

HAND2 2 datasets

ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 336 bp overlap

Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap

HDAC2 1 dataset

ChIP WA01 ENCSR000AVB.HDAC2.WA01 241 bp overlap

HIC2 1 dataset

Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap

HOXA4 1 dataset

Motif ES_0h ES_0h-HOXA4_MA1496.2 7 bp overlap

HOXB4 1 dataset

Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap

HOXB9 1 dataset

Motif ES_0h ES_0h-HOXB9_MA1503.2 9 bp overlap

HOXC10 1 dataset

Motif ES_0h ES_0h-HOXC10_MA0905.2 9 bp overlap

HOXC4 1 dataset

Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap

HOXC9 1 dataset

Motif ES_0h ES_0h-HOXC9_MA0485.3 9 bp overlap

HOXD11 1 dataset

Motif ES_0h ES_0h-HOXD11_MA0908.2 9 bp overlap

HOXD4 1 dataset

Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap

Hand1::Tcf3 1 dataset

Motif ES_0h ES_0h-Hand1Tcf3_MA0092.2 9 bp overlap

Hoxa11 1 dataset

Motif ES_0h ES_0h-Hoxa11_MA0911.2 9 bp overlap

JARID2 3 datasets

ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 267 bp overlap

ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 366 bp overlap

ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 196 bp overlap

JUN 2 datasets

ChIP ESC S34-ESC-d0-JUN-exp2 239 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 239 bp overlap

JUND 1 dataset

Motif ES_0h ES_0h-JUND_MA0492.2 11 bp overlap

KDM4A 2 datasets

ChIP H1 ENCFF078LED 367 bp overlap

ChIP WA01 ENCSR000AVC.KDM4A.WA01 265 bp overlap

MAX 2 datasets

ChIP H1 ENCFF914VQY 130 bp overlap

ChIP WA01 ENCSR000EUP.MAX.WA01 248 bp overlap

MSC 1 dataset

Motif ES_0h ES_0h-MSC_MA0665.1 10 bp overlap

MXI1 1 dataset

Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap

MYCN 2 datasets

ChIP CHP-134 GSE129588.MYCN.CHP-134 472 bp overlap

ChIP LA-N-5 GSE138295.MYCN.LA-N-5 553 bp overlap

Msgn1 1 dataset

Motif ES_0h ES_0h-Msgn1_MA1524.3 10 bp overlap

NANOG 9 datasets

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 281 bp overlap

ChIP H1 ENCFF747ZPQ 236 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 629 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 270 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 236 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 169 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 272 bp overlap

ChIP hESC GSE20650.NANOG.hESC 221 bp overlap

ChIP hESC GSE18292.NANOG.hESC 90 bp overlap

NELFE 1 dataset

ChIP K-562_HS GSE112379.NELFE.K-562_HS 190 bp overlap

NEUROD1 1 dataset

Motif ES_0h ES_0h-NEUROD1_MA1109.2 8 bp overlap

NEUROG2 1 dataset

Motif ES_0h ES_0h-NEUROG2_MA1642.2 7 bp overlap

NFATC3 1 dataset

Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap

NFIA 1 dataset

Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap

NFIX 1 dataset

Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap

NKX6-1 1 dataset

Motif ES_0h ES_0h-NKX6-1_MA0674.2 7 bp overlap

NKX6-3 1 dataset

Motif ES_0h ES_0h-NKX6-3_MA1530.2 8 bp overlap

Neurod2 1 dataset

Motif ES_0h ES_0h-Neurod2_MA0668.3 8 bp overlap

Nfatc1 1 dataset

Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap

PCGF2 1 dataset

ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 166 bp overlap

PLAGL2 1 dataset

Motif ES_0h ES_0h-PLAGL2_MA1548.2 8 bp overlap

POU4F2 1 dataset

ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 208 bp overlap

POU5F1 4 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 506 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 207 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 437 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 164 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 268 bp overlap

POU6F1 1 dataset

Motif ES_0h ES_0h-POU6F1_MA1549.2 7 bp overlap

POU6F2 1 dataset

Motif ES_0h ES_0h-POU6F2_MA0793.2 9 bp overlap

Ptf1A 1 dataset

Motif ES_0h ES_0h-Ptf1A_MA1618.2 9 bp overlap

RAD21 1 dataset

ChIP H1 ENCFF698EWO 241 bp overlap

RARA 2 datasets

ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 253 bp overlap

ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 360 bp overlap

RARA::RXRA 1 dataset

Motif ES_0h ES_0h-RARARXRA_MA0159.1 17 bp overlap

RBBP5 2 datasets

ChIP WA01 ENCSR000AQC.RBBP5.WA01 86 bp overlap

ChIP WA01 ENCSR000AQC.RBBP5.WA01 286 bp overlap

REST 11 datasets

ChIP GM12878 ENCSR000BGF.REST.GM12878 79 bp overlap

ChIP GM23338 ENCFF024TCL 244 bp overlap

ChIP GM23338 ENCSR871KYB.REST.GM23338 196 bp overlap

ChIP GM23338 ENCSR871KYB.REST.GM23338 88 bp overlap

ChIP GM23338 ENCSR871KYB.REST.GM23338 189 bp overlap

ChIP H1 ENCFF429RUE 231 bp overlap

ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 203 bp overlap

ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 107 bp overlap

ChIP WA01 ENCSR000BHM.REST.WA01 201 bp overlap

ChIP WA01 ENCSR000BHM.REST.WA01 375 bp overlap

ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 118 bp overlap

RNF2 3 datasets

ChIP H1 ENCFF239FFS 507 bp overlap

ChIP WA01 GSE104690.RNF2.WA01 431 bp overlap

ChIP fibroblast GSE139053.RNF2.fibroblast 186 bp overlap

SAP30 1 dataset

ChIP WA01 ENCSR000ATR.SAP30.WA01 75 bp overlap

SIN3A 2 datasets

ChIP WA01 ENCSR000EBO.SIN3A.WA01 149 bp overlap

ChIP WA01 ENCSR000EBO.SIN3A.WA01 266 bp overlap

SMAD2 1 dataset

Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap

SOX2 2 datasets

ChIP hESC GSE18292.SOX2.hESC 81 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 292 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 275 bp overlap

SP4 1 dataset

ChIP WA01 ENCSR000BQV.SP4.WA01 288 bp overlap

SUZ12 7 datasets

ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 367 bp overlap

ChIP H1 ENCFF881NFR 629 bp overlap

ChIP LNCaP GSE39459.SUZ12.LNCaP 197 bp overlap

ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 73 bp overlap

ChIP NT2/D1 ENCFF574SXS 125 bp overlap

ChIP NT2/D1 ENCFF574SXS 331 bp overlap

ChIP WA01 ENCSR000ATS.SUZ12.WA01 391 bp overlap

TAF1 1 dataset

ChIP WA01 ENCSR000BHO.TAF1.WA01 157 bp overlap

TAL1::TCF3 1 dataset

Motif ES_0h ES_0h-TAL1TCF3_MA0091.2 10 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 186 bp overlap

TEAD4 1 dataset

ChIP H1 ENCFF778PAX 245 bp overlap

TFAP4::FLI1 1 dataset

Motif ES_0h ES_0h-TFAP4FLI1_MA1967.2 14 bp overlap

THAP1 1 dataset

Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap

Tcf21 1 dataset

Motif ES_0h ES_0h-Tcf21_MA0832.2 10 bp overlap

YY1 3 datasets

ChIP H1 ENCFF524BTL 337 bp overlap

ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 313 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 404 bp overlap

ZNF283 1 dataset

ChIP HEK293T GSE78099.ZNF283.HEK293T 187 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCFF896CCA 251 bp overlap

ZNF479 2 datasets

ChIP HEK293T GSE78099.ZNF479.HEK293T 131 bp overlap

ChIP HEK293T GSE78099.ZNF479.HEK293T 194 bp overlap

ZNF490 1 dataset

ChIP HEK293 GSE76494.ZNF490.HEK293 154 bp overlap

ZNF530 1 dataset

Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap

ZNF667 1 dataset

Motif ES_0h ES_0h-ZNF667_MA1984.2 11 bp overlap

Zfp335 1 dataset

Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap