chr7 : 18,495,152 18,495,305
153 bp 92 TFs 1 linked gene
This 153 bp open chromatin element is linked to HDAC9 and is bound by 92 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
HDAC9 860 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:18,490,152 – 18,500,305
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
AHR 2 datasets
ChIP GM01310_3MC GSE116632.AHR.GM01310_3MC 115 bp overlap
ChIP GM01310_DMSO GSE116632.AHR.GM01310_DMSO 135 bp overlap
ARID2 2 datasets
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 153 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 107 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 153 bp overlap
ATF2 1 dataset
ChIP GM12878 ENCSR000BQK.ATF2.GM12878 153 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 130 bp overlap
BCL6 1 dataset
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 153 bp overlap
BRD4 26 datasets
ChIP GM15850_PA1_JQ1 GSE99402.BRD4.GM15850_PA1_JQ1 153 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 128 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 153 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 153 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 153 bp overlap
ChIP MM1-S GSE45984.BRD4.MM1-S 153 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 153 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 153 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 153 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 150 bp overlap
ChIP MOLM-14_CA25 GSE65138.BRD4.MOLM-14_CA25 153 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 87 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 153 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 132 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 153 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 153 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 153 bp overlap
ChIP MV4-11_DMSO GSE71776.BRD4.MV4-11_DMSO 111 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 153 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 102 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 122 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 153 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 119 bp overlap
ChIP THP-1_iBET-BD2-PMA GSE138084.BRD4.THP-1_iBET-BD2-PMA 108 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 153 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 62 bp overlap
BRD9 1 dataset
ChIP Mel270_DMSO GSE124720.BRD9.Mel270_DMSO 151 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 101 bp overlap
CBFB 2 datasets
ChIP GM12878 ENCFF056JUS 153 bp overlap
ChIP GM12878 ENCSR860UHK.CBFB.GM12878 152 bp overlap
CDK8 5 datasets
ChIP MOLM-14 GSE65138.CDK8.MOLM-14 145 bp overlap
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 132 bp overlap
ChIP myometrium_PT1063 GSE128230.CDK8.myometrium_PT1063 107 bp overlap
ChIP myometrium_PT886 GSE128230.CDK8.myometrium_PT886 76 bp overlap
ChIP myometrium_PT916 GSE128230.CDK8.myometrium_PT916 62 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 153 bp overlap
CREM 1 dataset
ChIP GM12878 ENCSR839XZU.CREM.GM12878 134 bp overlap
CRY2 1 dataset
ChIP U2OS GSE130602.CRY2.U2OS 140 bp overlap
CTCF 9 datasets
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 153 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF359BHR 153 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF403LNW 153 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 153 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 141 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF841TWE 153 bp overlap
ChIP gastrocnemius-medialis ENCSR594NSU.CTCF.gastrocnemius-medialis 102 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 92 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 153 bp overlap
DPF2 3 datasets
ChIP BIN-67 GSE117734.DPF2.BIN-67 57 bp overlap
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 153 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 153 bp overlap
EGR1 9 datasets
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
ChIP GM12878 ENCFF092DJY 153 bp overlap
ChIP GM12878 ENCSR000BMQ.EGR1.GM12878 149 bp overlap
ChIP HL-60 GSE106359.EGR1.HL-60 142 bp overlap
ChIP Ishikawa ENCSR000BSQ.EGR1.Ishikawa 130 bp overlap
ChIP T-HESCs GSE141063.EGR1.T-HESCs 153 bp overlap
ChIP fibroblast_DOX-24h GSE134924.EGR1.fibroblast_DOX-24h 153 bp overlap
ChIP fibroblast_DOX-CLOB-24h GSE134924.EGR1.fibroblast_DOX-CLOB-24h 153 bp overlap
ChIP fibroblast_EtOH-24h GSE134924.EGR1.fibroblast_EtOH-24h 153 bp overlap
EP300 3 datasets
ChIP 697 GSE138031.EP300.697 139 bp overlap
ChIP AML GSE131939.EP300.AML 114 bp overlap
ChIP GM12878 ENCFF242HCG 153 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 112 bp overlap
FOS 2 datasets
ChIP leiomyoma_PT886 GSE128230.FOS.leiomyoma_PT886 100 bp overlap
ChIP myometrium_PT886 GSE128230.FOS.myometrium_PT886 89 bp overlap
FOSL2 1 dataset
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 153 bp overlap
FOXL2 1 dataset
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 153 bp overlap
FOXM1 1 dataset
ChIP GM12878 ENCSR000BRU.FOXM1.GM12878 130 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 153 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF824TGK 153 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 153 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 153 bp overlap
IRF4 1 dataset
ChIP B-cell GSE142493.IRF4.B-cell 153 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 61 bp overlap
JMJD1C 2 datasets
ChIP NB4 GSE63484.JMJD1C.NB4 147 bp overlap
ChIP THP-1 GSE63484.JMJD1C.THP-1 153 bp overlap
JUN 1 dataset
ChIP leiomyoma_PT886 GSE128230.JUN.leiomyoma_PT886 113 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 153 bp overlap
KLF9 1 dataset
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
KMT2A 3 datasets
ChIP L826 GSE83671.KMT2A.L826 153 bp overlap
ChIP OCI-AML-3_DMSO GSE129636.KMT2A.OCI-AML-3_DMSO 153 bp overlap
ChIP THP-1 GSE83671.KMT2A.THP-1 153 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 153 bp overlap
KMT2C 1 dataset
ChIP BIN-67_ctrl GSE117734.KMT2C.BIN-67_ctrl 153 bp overlap
LDB1 2 datasets
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 88 bp overlap
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 110 bp overlap
MAX 2 datasets
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 126 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 97 bp overlap
MED1 3 datasets
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 153 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 153 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 153 bp overlap
MED12 8 datasets
ChIP leiomyoma_PT1063 GSE128230.MED12.leiomyoma_PT1063 65 bp overlap
ChIP leiomyoma_PT848 GSE128230.MED12.leiomyoma_PT848 58 bp overlap
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 149 bp overlap
ChIP leiomyoma_PT967 GSE128230.MED12.leiomyoma_PT967 135 bp overlap
ChIP myometrium_PT1063 GSE128230.MED12.myometrium_PT1063 101 bp overlap
ChIP myometrium_PT886 GSE128230.MED12.myometrium_PT886 83 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 72 bp overlap
ChIP myometrium_PT967 GSE128230.MED12.myometrium_PT967 84 bp overlap
MEF2A 4 datasets
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
ChIP GM12878 ENCFF652BHX 128 bp overlap
ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 153 bp overlap
ChIP SK-N-SH ENCSR000BVC.MEF2A.SK-N-SH 153 bp overlap
MEF2B 4 datasets
Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap
ChIP DLBCL GSE110682.MEF2B.DLBCL 153 bp overlap
ChIP DOHH2 GSE69558.MEF2B.DOHH2 121 bp overlap
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 64 bp overlap
MEF2C 3 datasets
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
ChIP GM12878 ENCFF473ASZ 153 bp overlap
ChIP GM12878 ENCSR000BNG.MEF2C.GM12878 153 bp overlap
MEF2D 1 dataset
Motif DE_12h DE_12h-MEF2D_MA0773.1 12 bp overlap
MTA2 2 datasets
ChIP RH4 GSE155861.MTA2.RH4 85 bp overlap
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 153 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 144 bp overlap
MYB 1 dataset
ChIP DU528 GSE94000.MYB.DU528 153 bp overlap
MYCN 3 datasets
ChIP Kelly GSE94822.MYCN.Kelly 104 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 150 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 107 bp overlap
MYOG 1 dataset
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 153 bp overlap
NFATC1 2 datasets
ChIP GM12878 ENCFF023CAZ 153 bp overlap
ChIP GM12878 ENCSR000BQL.NFATC1.GM12878 153 bp overlap
NFIC 2 datasets
ChIP GM12878 ENCFF259FWL 140 bp overlap
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 153 bp overlap
NIPBL 1 dataset
ChIP LCL GSE38395.NIPBL.LCL 127 bp overlap
NR4A1 1 dataset
ChIP Kasumi-1 GSE79491.NR4A1.Kasumi-1 146 bp overlap
Nr2e3 1 dataset
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 96 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 113 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 153 bp overlap
POU2F2 1 dataset
ChIP pre-B-cell GSE107886.POU2F2.pre-B-cell 108 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 70 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 97 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
RAD21 6 datasets
ChIP THP-1_PMA_Dex-0h GSE103477.RAD21.THP-1_PMA_Dex-0h 153 bp overlap
ChIP THP-1_PMA_IFNb-0h GSE103477.RAD21.THP-1_PMA_IFNb-0h 153 bp overlap
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 139 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 138 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-060m-Flavo-000m 149 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 62 bp overlap
RBPJ 3 datasets
ChIP GSC8-11 GSE74557.RBPJ.GSC8-11 153 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 153 bp overlap
ChIP LCL GSE75503.RBPJ.LCL 131 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 153 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 134 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 153 bp overlap
RUNX1 8 datasets
ChIP 697 GSE138031.RUNX1.697 153 bp overlap
ChIP Kasumi-1 GSE62847.RUNX1.Kasumi-1 150 bp overlap
ChIP MV4-11 GSE79899.RUNX1.MV4-11 153 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 153 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 153 bp overlap
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 111 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 104 bp overlap
ChIP THP-1 GSE79899.RUNX1.THP-1 149 bp overlap
RUNX2 2 datasets
Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 147 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 153 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 119 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 63 bp overlap
SMARCA2 3 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 153 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 153 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 153 bp overlap
SMARCA4 7 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 57 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 153 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 119 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 153 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 124 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 85 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 153 bp overlap
SMARCC1 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 153 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 110 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 69 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 153 bp overlap
SOX21 1 dataset
Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap
SPI1 2 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 114 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 106 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 153 bp overlap
SS18 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 104 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 72 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 153 bp overlap
STAT1 2 datasets
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 138 bp overlap
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 138 bp overlap
STAT3 2 datasets
ChIP B-cell GSE123398.STAT3.B-cell 142 bp overlap
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 127 bp overlap
Sox1 1 dataset
Motif DE_12h DE_12h-Sox1_MA0870.1 15 bp overlap
TAF1 2 datasets
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 146 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 149 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 127 bp overlap
TRIM24 2 datasets
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 153 bp overlap
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 153 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZNF608 1 dataset
ChIP SK-N-SH ENCFF518LYG 108 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap