chr6 : 33,950,527 33,951,235
708 bp 82 TFs 3 linked genes
This 708 bp open chromatin element is linked to LEMD2, UQCC2, and HMGA1 and is bound by 82 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
LEMD2 161.7 kb Distal Multiome
UQCC2 239.1 kb Distal Multiome
HMGA1 286.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:33,945,527 – 33,956,235
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
ASCL1 4 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 197 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 180 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 242 bp overlap
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 153 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 264 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 446 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 449 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 165 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 149 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 267 bp overlap
BRD4 3 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 477 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 360 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 188 bp overlap
CDX2 1 dataset
ChIP LS180 GSE31939.CDX2.LS180 155 bp overlap
CEBPB 1 dataset
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 136 bp overlap
CREB1 6 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 178 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 231 bp overlap
ChIP MCF-7 ENCFF867SAS 296 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 231 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 230 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 158 bp overlap
CREBBP 2 datasets
ChIP LS180_125 GSE39277.CREBBP.LS180_125 81 bp overlap
ChIP LS180_125 GSE39277.CREBBP.LS180_125 81 bp overlap
CTCF 13 datasets
Motif DE_24h DE_24h-CTCF_MA1929.2 31 bp overlap
ChIP Peyers-patch ENCSR375VXU.CTCF.Peyers-patch 183 bp overlap
ChIP Peyers-patch ENCSR419ANE.CTCF.Peyers-patch 258 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 330 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 236 bp overlap
ChIP colon_transverse ENCSR769WKR.CTCF.colon_transverse 199 bp overlap
ChIP endodermal cell ENCFF471YCZ 390 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 111 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 209 bp overlap
ChIP keratinocyte ENCFF667ULX 325 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 246 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 191 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d3 161 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 61 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 83 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 156 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 330 bp overlap
ESR1 1 dataset
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 221 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 305 bp overlap
EZH2 2 datasets
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 445 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 184 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 411 bp overlap
ChIP DE DE-FOXA2-2 436 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 604 bp overlap
ChIP DE DE-GATA4-2 528 bp overlap
ChIP ESO-26 GSE132813.GATA4.ESO-26 292 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 253 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 445 bp overlap
ChIP DE DE-GATA6-2 560 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 708 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 708 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 708 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 512 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 448 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 708 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 708 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 192 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 544 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 137 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 214 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 697 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 424 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 662 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 517 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 517 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 342 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 708 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 275 bp overlap
JUND 1 dataset
Motif DE_24h DE_24h-JUND_MA0492.2 11 bp overlap
KDM1A 3 datasets
ChIP H1 ENCFF696SGD 368 bp overlap
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 708 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 135 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 106 bp overlap
KLF5 2 datasets
ChIP ESO-26 GSE132680.KLF5.ESO-26 708 bp overlap
ChIP GP5D GSE51234.KLF5.GP5D 537 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 680 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 674 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 197 bp overlap
MED1 2 datasets
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 166 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 234 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_24h DE_24h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_24h DE_24h-MEIS3_MA0775.2 7 bp overlap
MYC 5 datasets
ChIP GP5D GSE51234.MYC.GP5D 301 bp overlap
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 225 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 420 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 178 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 411 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94782.MYCN.Kelly 142 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 198 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 322 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 647 bp overlap
NCOR1 1 dataset
ChIP LS180 GSE39277.NCOR1.LS180 93 bp overlap
NCOR2 1 dataset
ChIP LS180 GSE39277.NCOR2.LS180 100 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 516 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 227 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 187 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 414 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 708 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 346 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 648 bp overlap
PROX1 2 datasets
ChIP SW480 GSE60390.PROX1.SW480 205 bp overlap
ChIP SW480 GSE60390.PROX1.SW480 99 bp overlap
RAD21 1 dataset
ChIP GP5D GSE51234.RAD21.GP5D 651 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 203 bp overlap
RELA 2 datasets
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 232 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.RELA.MCF-7_TNFa_45m 184 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 368 bp overlap
RUNX1 1 dataset
ChIP AML_age-50-70 GSE111821.RUNX1.AML_age-50-70 208 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 675 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 671 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 708 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 678 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 638 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 708 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 594 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 430 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 403 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 285 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 547 bp overlap
SMARCE1 1 dataset
ChIP HMLE-Twist-ER_125nM_4OHT GSE96933.SMARCE1.HMLE-Twist-ER_125nM_4OHT 185 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 648 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 292 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 491 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 265 bp overlap
STAT1 1 dataset
Motif DE_24h DE_24h-STAT1_MA0137.4 9 bp overlap
STAT3 16 datasets
Motif DE_24h DE_24h-STAT3_MA0144.3 9 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 167 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 119 bp overlap
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 295 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 350 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 452 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 407 bp overlap
ChIP MCF-7_jc5842 GSE126004.STAT3.MCF-7_jc5842 176 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 141 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 251 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 288 bp overlap
ChIP T-47D_JC4755 GSE126004.STAT3.T-47D_JC4755 270 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 306 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 330 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 310 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 300 bp overlap
Stat4 1 dataset
Motif DE_24h DE_24h-Stat4_MA0518.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 222 bp overlap
TAL1 1 dataset
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 217 bp overlap
TFAP2C 2 datasets
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 214 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 478 bp overlap
THRB 1 dataset
Motif DE_24h DE_24h-THRB_MA1575.2 17 bp overlap
TP63 5 datasets
ChIP SUIT-2 GSE115461.TP63.SUIT-2 179 bp overlap
ChIP breast-organoid GSE113909.TP63.breast-organoid 148 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 229 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 192 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 156 bp overlap
TRIM25 1 dataset
ChIP MDA-MB-231 GSE79588.TRIM25.MDA-MB-231 180 bp overlap
Tfcp2l1 1 dataset
Motif DE_24h DE_24h-Tfcp2l1_MA0145.2 14 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 145 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 178 bp overlap
ZFX 2 datasets
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 283 bp overlap
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 311 bp overlap
ZKSCAN1 3 datasets
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 203 bp overlap
ChIP K562 ENCFF977CBA 89 bp overlap
ChIP MCF-7 ENCSR449UFF.ZKSCAN1.MCF-7 152 bp overlap
ZNF257 1 dataset
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 153 bp overlap
ZNF664 2 datasets
ChIP HEK293 ENCFF343XSW 176 bp overlap
ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 237 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 126 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 255 bp overlap