chr1 : 100,719,522 100,719,945
423 bp 83 TFs 1 linked gene
This 423 bp open chromatin element is linked to VCAM1 and is bound by 83 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
VCAM1 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:100,714,522 – 100,724,945
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 423 bp overlap
ATF2 1 dataset
ChIP GM12878 ENCSR000BQK.ATF2.GM12878 174 bp overlap
BCL11A 2 datasets
ChIP GM12878 ENCFF717YPR 271 bp overlap
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 267 bp overlap
BCL3 2 datasets
ChIP GM12878 ENCFF854PAY 351 bp overlap
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 143 bp overlap
BCLAF1 1 dataset
ChIP GM12878 ENCFF306JRM 396 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 213 bp overlap
BORCS8-MEF2B,MEF2B 2 datasets
ChIP GM12878 ENCFF427QAI 423 bp overlap
ChIP GM12878 ENCFF427QAI 353 bp overlap
BRD4 2 datasets
ChIP HUVEC-C_TNF GSE53998.BRD4.HUVEC-C_TNF 423 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 119 bp overlap
CBFB 2 datasets
ChIP GM12878 ENCFF056JUS 423 bp overlap
ChIP GM12878 ENCSR860UHK.CBFB.GM12878 376 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 331 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 235 bp overlap
CREM 1 dataset
ChIP GM12878 ENCSR839XZU.CREM.GM12878 136 bp overlap
CTCF 2 datasets
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 239 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 141 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCFF681AJV 423 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 234 bp overlap
E2F6 1 dataset
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF167CZS 321 bp overlap
EGR1 3 datasets
ChIP GM12878 ENCFF092DJY 211 bp overlap
ChIP GM12878 ENCSR000BMQ.EGR1.GM12878 128 bp overlap
ChIP Ishikawa ENCSR000BSQ.EGR1.Ishikawa 104 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 210 bp overlap
ETV6 1 dataset
ChIP GM12878 GSE97661.ETV6.GM12878 251 bp overlap
FOXM1 1 dataset
ChIP GM12878 ENCSR000BRU.FOXM1.GM12878 161 bp overlap
GATA4 1 dataset
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 240 bp overlap
GATA6 1 dataset
ChIP DE_D2 S55-DE-d2-GATA6-exp2 88 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 226 bp overlap
HMGB1 1 dataset
ChIP IMR-90 GSE98245.HMGB1.IMR-90 366 bp overlap
HMGB2 1 dataset
ChIP IMR-90_proliferating GSE98245.HMGB2.IMR-90_proliferating 293 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 253 bp overlap
ChIP GM12878 ENCFF824TGK 423 bp overlap
IKZF2 4 datasets
ChIP GM12878 ENCFF238LYK 423 bp overlap
ChIP GM12878 ENCFF918AID 423 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 331 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 295 bp overlap
IRF1 1 dataset
ChIP HAEC_IL1b_4h GSE89970.IRF1.HAEC_IL1b_4h 147 bp overlap
IRF4 1 dataset
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 345 bp overlap
JUN 1 dataset
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 306 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 300 bp overlap
MED1 1 dataset
ChIP GM12878 GSE93080.MED1.GM12878 189 bp overlap
MEF2A 2 datasets
ChIP GM12878 ENCFF652BHX 269 bp overlap
ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 216 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 423 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 379 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 326 bp overlap
MTA3 2 datasets
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 188 bp overlap
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 165 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 396 bp overlap
NFATC1 1 dataset
ChIP HUVEC-C_VEGF GSE49428.NFATC1.HUVEC-C_VEGF 269 bp overlap
NFATC3 3 datasets
ChIP GM12878 ENCFF340KVJ 423 bp overlap
ChIP GM12878 ENCFF340KVJ 332 bp overlap
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 361 bp overlap
NFIC 2 datasets
ChIP GM12878 ENCFF259FWL 423 bp overlap
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 248 bp overlap
NFKB1 2 datasets
Motif DE_12h DE_12h-NFKB1_MA0105.4 13 bp overlap
ChIP L1236 GSE63736.NFKB1.L1236 256 bp overlap
NFKB2 2 datasets
Motif DE_12h DE_12h-NFKB2_MA0778.2 11 bp overlap
ChIP L1236 GSE63736.NFKB2.L1236 241 bp overlap
NIPBL 1 dataset
ChIP GM12878 GSE93080.NIPBL.GM12878 230 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 349 bp overlap
PAX5 2 datasets
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 266 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 152 bp overlap
PBX3 1 dataset
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 107 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 278 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 319 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 177 bp overlap
PML 2 datasets
ChIP GM12878 ENCFF160JQZ 423 bp overlap
ChIP GM12878 ENCSR000BQM.PML.GM12878 271 bp overlap
POLR2A 21 datasets
ChIP GM12878 ENCFF263VRI 204 bp overlap
ChIP GM12878 ENCFF412KAE 386 bp overlap
ChIP GM12878 ENCFF521FXC 146 bp overlap
ChIP GM12892 ENCFF245LYF 423 bp overlap
ChIP GM12892 ENCFF506PGQ 385 bp overlap
ChIP GM12892 ENCFF542ZFO 423 bp overlap
ChIP GM19099 ENCFF726IBN 423 bp overlap
ChIP GM19193 ENCFF599VTO 420 bp overlap
ChIP IMR-90 ENCFF672YWV 254 bp overlap
ChIP adrenal gland ENCFF843OBJ 193 bp overlap
ChIP body of pancreas ENCFF501FEC 268 bp overlap
ChIP body of pancreas ENCFF675RCN 300 bp overlap
ChIP body of pancreas ENCFF727UBE 416 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 374 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 146 bp overlap
ChIP sigmoid colon ENCFF653CQA 413 bp overlap
ChIP sigmoid colon ENCFF754JQR 112 bp overlap
ChIP spleen ENCFF044PYR 366 bp overlap
ChIP spleen ENCFF446ZGT 423 bp overlap
ChIP spleen ENCFF955VIQ 118 bp overlap
ChIP uterus ENCFF566ZPY 310 bp overlap
POU2F2 1 dataset
ChIP GM12878 ENCFF207RKY 321 bp overlap
RAD21 3 datasets
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 243 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 179 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 215 bp overlap
RELA 54 datasets
ChIP 786-O GSE86092.RELA.786-O 423 bp overlap
ChIP 786-O GSE109953.RELA.786-O 366 bp overlap
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
ChIP GM10847 ENCSR000DYM.RELA.GM10847 200 bp overlap
ChIP GM12878 ENCFF513IEN 310 bp overlap
ChIP GM12878 ENCSR664POU.RELA.GM12878 369 bp overlap
ChIP GM12878 ENCSR000EAG.RELA.GM12878 418 bp overlap
ChIP GM12891 ENCSR000EAI.RELA.GM12891 290 bp overlap
ChIP GM12892 ENCSR000EAN.RELA.GM12892 146 bp overlap
ChIP GM15510 ENCSR000EAQ.RELA.GM15510 208 bp overlap
ChIP GM18505 ENCSR000EAW.RELA.GM18505 146 bp overlap
ChIP GM18526 ENCSR000EBA.RELA.GM18526 195 bp overlap
ChIP GM19099 ENCSR000EBI.RELA.GM19099 270 bp overlap
ChIP HAEC GSE89970.RELA.HAEC 227 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 423 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 423 bp overlap
ChIP HUVEC-C_TNF GSE43070.RELA.HUVEC-C_TNF 369 bp overlap
ChIP HUVEC-C_TNF GSE53998.RELA.HUVEC-C_TNF 347 bp overlap
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 341 bp overlap
ChIP HUVEC-C_TNF-60min GSE121890.RELA.HUVEC-C_TNF-60min 277 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 341 bp overlap
ChIP IMR-90_TNF GSE43070.RELA.IMR-90_TNF 343 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 296 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 399 bp overlap
ChIP aortic-endothelial-cell_IL1B_D10 GSE139377.RELA.aortic-endothelial-cell_IL1B_D10 216 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 311 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 423 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 262 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 423 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 423 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 423 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 423 bp overlap
ChIP aortic-endothelial-cell_IL1B_D24 GSE139377.RELA.aortic-endothelial-cell_IL1B_D24 273 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 423 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 396 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 334 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 262 bp overlap
ChIP aortic-endothelial-cell_IL1B_D3 GSE139377.RELA.aortic-endothelial-cell_IL1B_D3 403 bp overlap
ChIP aortic-endothelial-cell_IL1B_D31 GSE139377.RELA.aortic-endothelial-cell_IL1B_D31 262 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 361 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 327 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 423 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 331 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 423 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 399 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 404 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 340 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 423 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 247 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 288 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 296 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 303 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 399 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 416 bp overlap
RELB 3 datasets
ChIP GM12878 ENCFF217ADF 270 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 423 bp overlap
ChIP L1236 GSE63736.RELB.L1236 185 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 347 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 175 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 287 bp overlap
SMAD3 1 dataset
ChIP breast-cancer_triple-negative GSE130364.SMAD3.breast-cancer_triple-negative 328 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 312 bp overlap
SMARCA4 1 dataset
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 76 bp overlap
SMC3 1 dataset
ChIP GM12878 ENCFF085RLZ 271 bp overlap
SNAI2 2 datasets
ChIP RD GSE137168.SNAI2.RD 225 bp overlap
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 343 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 223 bp overlap
SP1 2 datasets
ChIP GM12878 ENCFF620LDJ 311 bp overlap
ChIP GM12878 ENCSR000BHK.SP1.GM12878 254 bp overlap
TAF1 4 datasets
ChIP GM12878 ENCSR000BGS.TAF1.GM12878 194 bp overlap
ChIP H1 ENCFF478SZO 423 bp overlap
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 106 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 329 bp overlap
TBL1XR1 1 dataset
ChIP GM12878 ENCFF409FTM 364 bp overlap
TBP 3 datasets
ChIP GM12878 ENCFF571OXR 385 bp overlap
ChIP GM12878 ENCSR000DZZ.TBP.GM12878 244 bp overlap
ChIP hESC GSE122298.TBP.hESC 141 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 208 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 217 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 104 bp overlap
TCF7 1 dataset
ChIP GM12878 ENCSR501DKS.TCF7.GM12878 199 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 310 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 359 bp overlap
WRNIP1 1 dataset
ChIP GM12878 ENCFF384UKU 351 bp overlap
YY1 1 dataset
ChIP GM12878 ENCFF908JTL 345 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 104 bp overlap
ZNF217 1 dataset
ChIP GM12878 ENCFF978IGL 406 bp overlap
ZNF597 1 dataset
ChIP GM12878 GSE97661.ZNF597.GM12878 203 bp overlap
ZNF652 2 datasets
ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 206 bp overlap
ChIP HepG2 ENCFF331VPZ 252 bp overlap
ZNF687 1 dataset
ChIP GM12878 ENCFF233SGE 383 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap