chr5 : 98,656,235 98,657,234
999 bp 134 TFs 3 linked genes
This 999 bp open chromatin element is linked to RGMB, CHD1, and CHD1-DT and is bound by 134 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
RGMB 112.6 kb Distal Multiome
CHD1 272.3 kb Distal Multiome
CHD1-DT 272.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:98,651,235 – 98,662,234
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
134 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 184 bp overlap
Atf3 2 datasets
Motif DE_12h DE_12h-Atf3_MA1988.2 7 bp overlap
Motif ES_0h ES_0h-Atf3_MA1988.2 7 bp overlap
BACH1 2 datasets
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
Motif ES_0h ES_0h-BACH1_MA1633.2 9 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 417 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BATF 2 datasets
Motif DE_12h DE_12h-BATF_MA1634.2 7 bp overlap
Motif ES_0h ES_0h-BATF_MA1634.2 7 bp overlap
BATF3 2 datasets
Motif DE_12h DE_12h-BATF3_MA0835.3 7 bp overlap
Motif ES_0h ES_0h-BATF3_MA0835.3 7 bp overlap
BATF::JUN 2 datasets
Motif DE_12h DE_12h-BATFJUN_MA0462.3 7 bp overlap
Motif ES_0h ES_0h-BATFJUN_MA0462.3 7 bp overlap
BCL11A 2 datasets
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 167 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 140 bp overlap
BCL6B 2 datasets
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
Motif ES_0h ES_0h-BCL6B_MA0731.1 17 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 158 bp overlap
BNC2 2 datasets
Motif DE_12h DE_12h-BNC2_MA1928.2 7 bp overlap
Motif ES_0h ES_0h-BNC2_MA1928.2 7 bp overlap
BRD4 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 702 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 329 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
Bcl11B 2 datasets
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
Motif ES_0h ES_0h-Bcl11B_MA1989.2 9 bp overlap
CEBPA 2 datasets
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
Motif ES_0h ES_0h-CEBPA_MA0102.5 10 bp overlap
CEBPD 2 datasets
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
Motif ES_0h ES_0h-CEBPD_MA0836.3 8 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 194 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 715 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dmbx1 1 dataset
Motif DE_12h DE_12h-Dmbx1_MA0883.2 10 bp overlap
E2F6 1 dataset
ChIP H1 ENCFF785DWK 451 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 273 bp overlap
EP300 1 dataset
ChIP hESC GSE17917.EP300.hESC 373 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 322 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FLI1 1 dataset
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 291 bp overlap
FOSL2 3 datasets
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 350 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 294 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 647 bp overlap
ChIP DE DE-FOXA2-2 525 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXD2 2 datasets
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap
FOXO1::ELF1 2 datasets
Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif ES_0h ES_0h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 201 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 282 bp overlap
ChIP DE DE-GATA4-2 612 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 257 bp overlap
GATA6 8 datasets
ChIP AGS GSE51705.GATA6.AGS 279 bp overlap
ChIP DE DE-GATA6-2 619 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 680 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 280 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 309 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 621 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 469 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 820 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Gfi1B 2 datasets
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
Motif ES_0h ES_0h-Gfi1B_MA0483.2 10 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 167 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HLF 2 datasets
Motif DE_12h DE_12h-HLF_MA0043.4 9 bp overlap
Motif ES_0h ES_0h-HLF_MA0043.4 9 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
IRF2 1 dataset
Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 263 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 283 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 506 bp overlap
Jun 2 datasets
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
Motif ES_0h ES_0h-Jun_MA0489.3 8 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 115 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
Lhx3 1 dataset
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 242 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MYF5 1 dataset
Motif ES_0h ES_0h-MYF5_MA1641.2 8 bp overlap
MYOG 1 dataset
Motif ES_0h ES_0h-MYOG_MA0500.3 8 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 113 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 782 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 319 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 260 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 911 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 660 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 725 bp overlap
ChIP hESC GSE18292.NANOG.hESC 164 bp overlap
ChIP hESC GSE18292.NANOG.hESC 167 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 245 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 252 bp overlap
NFIA 2 datasets
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
NFIB 2 datasets
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
Motif ES_0h ES_0h-NFIB_MA1643.2 17 bp overlap
NFIC 2 datasets
Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap
Motif ES_0h ES_0h-NFIC_MA1527.2 15 bp overlap
NFIC::TLX1 2 datasets
Motif DE_12h DE_12h-NFICTLX1_MA0119.1 14 bp overlap
Motif ES_0h ES_0h-NFICTLX1_MA0119.1 14 bp overlap
NFIL3 2 datasets
Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap
Motif ES_0h ES_0h-NFIL3_MA0025.3 9 bp overlap
NFIX 4 datasets
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
Motif DE_12h DE_12h-NFIX_MA1528.2 14 bp overlap
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
Motif ES_0h ES_0h-NFIX_MA1528.2 14 bp overlap
NFYA 1 dataset
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
NHLH1 1 dataset
Motif ES_0h ES_0h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif ES_0h ES_0h-NHLH2_MA1529.2 16 bp overlap
NR1I3 1 dataset
Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap
Nfat5 2 datasets
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 3 datasets
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
OSR2 1 dataset
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
Olig2 1 dataset
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 115 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
POLR2A 2 datasets
ChIP stomach ENCFF607ZPU 231 bp overlap
ChIP stomach ENCFF820WZN 141 bp overlap
POU4F1 1 dataset
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 434 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 388 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Pax7 1 dataset
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
Ptf1A 2 datasets
Motif ES_0h ES_0h-Ptf1A_MA1619.2 8 bp overlap
Motif ES_0h ES_0h-Ptf1A_MA1620.2 8 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 762 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 905 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
ChIP GIC GSE79734.RBPJ.GIC 250 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
Runx1 3 datasets
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
Motif ES_0h ES_0h-Runx1_MA0002.3 9 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 204 bp overlap
SMARCA2 6 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 796 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 262 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 231 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 227 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 286 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 223 bp overlap
SMARCA4 6 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 876 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 348 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 317 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 346 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 956 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 338 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 534 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 417 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 441 bp overlap
SOX2 5 datasets
ChIP HNSC GSE69479.SOX2.HNSC 999 bp overlap
ChIP hESC GSE18292.SOX2.hESC 181 bp overlap
ChIP hESC GSE18292.SOX2.hESC 101 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 346 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 346 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 638 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 244 bp overlap
STAT1::STAT2 2 datasets
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
Motif ES_0h ES_0h-STAT1STAT2_MA0517.2 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 228 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 153 bp overlap
TFAP4 1 dataset
Motif ES_0h ES_0h-TFAP4_MA0691.1 10 bp overlap
TP53 1 dataset
ChIP UACC-257_2h_4GY GSE100292.TP53.UACC-257_2h_4GY 87 bp overlap
Tcf12 1 dataset
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
Vdr 1 dataset
Motif DE_12h DE_12h-Vdr_MA0693.4 7 bp overlap
ZIM3 4 datasets
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ChIP HEK293 GSE76494.ZIM3.HEK293 203 bp overlap
ChIP HEK293T GSE78099.ZIM3.HEK293T 293 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 298 bp overlap
ZNF354C 2 datasets
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
Motif ES_0h ES_0h-ZNF354C_MA0130.1 6 bp overlap
ZNF384 2 datasets
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
Motif ES_0h ES_0h-ZNF384_MA1125.2 8 bp overlap
ZNF440 1 dataset
ChIP HEK293T GSE78099.ZNF440.HEK293T 245 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 272 bp overlap
ZNF675 1 dataset
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZNF765 1 dataset
ChIP HEK293T GSE78099.ZNF765.HEK293T 165 bp overlap
ZNF766 2 datasets
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
Motif ES_0h ES_0h-ZNF766_MA2098.1 9 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap