chr4 : 93,730,270 93,731,036
766 bp 111 TFs 0 linked genes
This 766 bp open chromatin element has no linked target genes and is bound by 111 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:93,725,270 – 93,736,036
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
111 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP GSE80256.AR.LNCaP 225 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 140 bp overlap
ASCL1 1 dataset
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 109 bp overlap
Arid3a 2 datasets
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
Ascl2 1 dataset
Motif DE_48h DE_48h-Ascl2_MA0816.1 10 bp overlap
Atoh1 1 dataset
Motif DE_48h DE_48h-Atoh1_MA0461.3 8 bp overlap
BHLHE22 3 datasets
Motif DE_48h DE_48h-BHLHE22_MA0818.2 10 bp overlap
Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap
BRD4 2 datasets
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 612 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 531 bp overlap
Bcl11B 1 dataset
Motif DE_48h DE_48h-Bcl11B_MA1989.2 9 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 147 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 187 bp overlap
CTCF 3 datasets
ChIP RH4 GSE83726.CTCF.RH4 164 bp overlap
ChIP breast epithelium ENCFF080KNR 362 bp overlap
ChIP breast_epithelium ENCSR661NXJ.CTCF.breast_epithelium 472 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 102 bp overlap
Crx 1 dataset
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
DUX4 1 dataset
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap
Dmbx1 1 dataset
Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap
Dux 1 dataset
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
EOMES 2 datasets
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 140 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 162 bp overlap
ESR1 3 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 274 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 243 bp overlap
ChIP MCF-7_E2 GSE86538.ESR1.MCF-7_E2 113 bp overlap
ESRRB 1 dataset
Motif DE_48h DE_48h-ESRRB_MA0141.4 10 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 269 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 456 bp overlap
ChIP DE DE-FOXA2-2 504 bp overlap
FOXC2 1 dataset
Motif DE_48h DE_48h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 152 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 429 bp overlap
ChIP DE DE-GATA4-2 569 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 159 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 367 bp overlap
ChIP DE DE-GATA6-2 569 bp overlap
GSC 1 dataset
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 200 bp overlap
HDAC2 3 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 208 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 204 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 157 bp overlap
HOXB13 1 dataset
Motif DE_48h DE_48h-HOXB13_MA0901.3 9 bp overlap
ISL2 1 dataset
Motif DE_48h DE_48h-ISL2_MA0914.2 6 bp overlap
KDM5B 2 datasets
ChIP HCC2157 GSE46055.KDM5B.HCC2157 129 bp overlap
ChIP HCC2157 GSE46055.KDM5B.HCC2157 470 bp overlap
MED1 1 dataset
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 273 bp overlap
MEF2A 1 dataset
Motif DE_48h DE_48h-MEF2A_MA0052.5 10 bp overlap
MGA 1 dataset
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 210 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 238 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 284 bp overlap
MYOG 3 datasets
ChIP RH4 GSE83726.MYOG.RH4 729 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 52 bp overlap
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 452 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 405 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 331 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 159 bp overlap
NHLH1 2 datasets
Motif DE_48h DE_48h-NHLH1_MA0048.3 9 bp overlap
Motif DE_48h DE_48h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif DE_48h DE_48h-NHLH2_MA1529.2 16 bp overlap
NR2C1 1 dataset
Motif DE_48h DE_48h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_48h DE_48h-NR2C2_MA1536.2 6 bp overlap
NR4A1 1 dataset
Motif DE_48h DE_48h-NR4A1_MA1112.3 8 bp overlap
NR5A1 1 dataset
Motif DE_48h DE_48h-NR5A1_MA1540.3 12 bp overlap
Neurod2 2 datasets
Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap
Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap
Nr1H2 1 dataset
Motif DE_48h DE_48h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_48h DE_48h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_48h DE_48h-Nr1h3_MA2337.1 6 bp overlap
Nr2e1 1 dataset
Motif DE_48h DE_48h-Nr2e1_MA0676.1 9 bp overlap
Nr2f6 1 dataset
Motif DE_48h DE_48h-Nr2f6_MA0677.2 13 bp overlap
OTX1 1 dataset
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 222 bp overlap
Olig2 2 datasets
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
PAX3-FOXO1 3 datasets
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 177 bp overlap
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 621 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 244 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 307 bp overlap
PITX1 1 dataset
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
PKNOX2 2 datasets
Motif DE_48h DE_48h-PKNOX2_MA0783.1 12 bp overlap
Motif DE_60h DE_60h-PKNOX2_MA0783.1 12 bp overlap
POLR2A 2 datasets
ChIP breast epithelium ENCFF045XXN 199 bp overlap
ChIP breast epithelium ENCFF960NNA 330 bp overlap
POU2F1 1 dataset
ChIP T-47D GSE148277.POU2F1.T-47D 258 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 157 bp overlap
PPARD 1 dataset
Motif DE_48h DE_48h-PPARD_MA1550.2 14 bp overlap
PPARG 1 dataset
Motif DE_48h DE_48h-PPARG_MA0066.2 19 bp overlap
Ptf1A 1 dataset
Motif DE_48h DE_48h-Ptf1A_MA1619.2 8 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 259 bp overlap
RBPJ 3 datasets
ChIP HCC1599 GSE116871.RBPJ.HCC1599 260 bp overlap
ChIP HCC1599_GSI GSE116871.RBPJ.HCC1599_GSI 236 bp overlap
ChIP MDA-MB-157 GSE116868.RBPJ.MDA-MB-157 270 bp overlap
RHOXF1 1 dataset
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
RXRB 1 dataset
Motif DE_48h DE_48h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_48h DE_48h-RXRG_MA0856.1 14 bp overlap
Rxra 1 dataset
Motif DE_48h DE_48h-Rxra_MA0512.2 14 bp overlap
SALL2 1 dataset
ChIP HEK293 GSE145940.SALL2.HEK293 198 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 330 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 236 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 305 bp overlap
SREBF2 1 dataset
Motif DE_48h DE_48h-SREBF2_MA0596.1 10 bp overlap
STAT3 6 datasets
ChIP A-137 GSE85579.STAT3.A-137 243 bp overlap
ChIP A139 GSE85579.STAT3.A139 558 bp overlap
ChIP HCC1187 GSE152203.STAT3.HCC1187 256 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 635 bp overlap
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 203 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 412 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TBR1 1 dataset
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
TBX18 1 dataset
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
TCF21 1 dataset
Motif DE_48h DE_48h-TCF21_MA1568.2 10 bp overlap
TCF7 1 dataset
ChIP breast-organoid GSE113909.TCF7.breast-organoid 251 bp overlap
TFAP4 3 datasets
Motif DE_48h DE_48h-TFAP4_MA0691.1 10 bp overlap
Motif DE_48h DE_48h-TFAP4_MA0691.1 10 bp overlap
Motif DE_48h DE_48h-TFAP4_MA1570.1 10 bp overlap
TGIF1 2 datasets
Motif DE_48h DE_48h-TGIF1_MA0796.1 12 bp overlap
Motif DE_60h DE_60h-TGIF1_MA0796.1 12 bp overlap
THRA 1 dataset
Motif DE_48h DE_48h-THRA_MA1969.2 18 bp overlap
THRB 1 dataset
Motif DE_48h DE_48h-THRB_MA1576.2 18 bp overlap
Tbx6 1 dataset
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Tcf12 2 datasets
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 409 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 207 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 232 bp overlap
ZNF317 1 dataset
Motif DE_48h DE_48h-ZNF317_MA1593.2 8 bp overlap
ZNF354A 1 dataset
Motif DE_48h DE_48h-ZNF354A_MA1978.2 20 bp overlap
ZNF384 1 dataset
Motif DE_48h DE_48h-ZNF384_MA1125.2 8 bp overlap
ZNF558 1 dataset
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 339 bp overlap
ZNF784 1 dataset
Motif DE_48h DE_48h-ZNF784_MA1717.2 8 bp overlap