chr4 : 52,834,642 – 52,835,399
757 bp 83 TFs 4 linked genes
This 757 bp open chromatin element is linked to 4 target genes and is bound by 83 transcription factors.
Linked Genes
4 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RASL11B 27.3 kb Distal Multiome
ERVMER34-1 83.4 kb Distal Multiome
DANCR 122.5 kb Distal Multiome
USP46 175.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:52,829,642 – 52,840,399
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
AR 1 dataset
ChIP WTC11 ENCFF267GQJ 317 bp overlap
ASH2L 4 datasets
ChIP H1 ENCFF399KAM 756 bp overlap
ChIP H1 ENCFF399KAM 553 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 219 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 281 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 149 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 156 bp overlap
BRD4 2 datasets
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 146 bp overlap
ChIP hESC GSE33281.BRD4.hESC 70 bp overlap
CEBPA 2 datasets
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
Motif DE_24h DE_24h-CEBPA_MA0102.5 10 bp overlap
CEBPD 2 datasets
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
Motif DE_24h DE_24h-CEBPD_MA0836.3 8 bp overlap
CEBPG 1 dataset
Motif ES_0h ES_0h-CEBPG_MA1636.2 10 bp overlap
CREB1 2 datasets
Motif ES_0h ES_0h-CREB1_MA0018.5 8 bp overlap
ChIP GM23338 ENCFF432ZEW 305 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 481 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 212 bp overlap
DUX4 1 dataset
Motif DE_24h DE_24h-DUX4_MA0468.1 11 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 169 bp overlap
EMX1 1 dataset
ChIP WTC11 ENCFF692RZJ 532 bp overlap
EP300 1 dataset
ChIP H1 ENCFF927IYK 297 bp overlap
ERF::FOXI1 4 datasets
Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap
Motif DE_24h DE_24h-ERFFOXI1_MA1935.2 10 bp overlap
Motif DE_60h DE_60h-ERFFOXI1_MA1935.2 10 bp overlap
Motif DE_72h DE_72h-ERFFOXI1_MA1935.2 10 bp overlap
ERG 1 dataset
ChIP WTC11 ENCFF011YUL 281 bp overlap
ETS1 1 dataset
ChIP GM23338 ENCFF701IZH 377 bp overlap
ETV2::FOXI1 4 datasets
Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_24h DE_24h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_60h DE_60h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_72h DE_72h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
FLI1::FOXI1 4 datasets
Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif DE_24h DE_24h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif DE_60h DE_60h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif DE_72h DE_72h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 660 bp overlap
ChIP DE DE-FOXA2-2 436 bp overlap
FOXK1 2 datasets
ChIP WTC11 ENCFF875IGU 391 bp overlap
ChIP WTC11 ENCFF875IGU 391 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 467 bp overlap
ChIP DE DE-GATA4-2 640 bp overlap
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
Motif DE_24h DE_24h-GATA4_MA0482.3 8 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 464 bp overlap
ChIP DE DE-GATA6-2 475 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 596 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 476 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 549 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 523 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 502 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 596 bp overlap
HDAC2 2 datasets
ChIP WA01 ENCSR000AVB.HDAC2.WA01 168 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 458 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 307 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 528 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 596 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 416 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 442 bp overlap
Motif ES_0h ES_0h-JUN_MA0488.2 10 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 389 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 302 bp overlap
MAFF 1 dataset
Motif ES_0h ES_0h-MAFF_MA0495.4 11 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 168 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MYBL2 1 dataset
ChIP WTC11 ENCFF166TKT 497 bp overlap
Mafb 1 dataset
Motif ES_0h ES_0h-Mafb_MA0117.3 11 bp overlap
Mecom 2 datasets
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
Motif DE_24h DE_24h-Mecom_MA0029.2 11 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 153 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 735 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 723 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 123 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 721 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 742 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 491 bp overlap
ChIP hESC GSE20650.NANOG.hESC 186 bp overlap
NFE2L1 2 datasets
ChIP WTC11 ENCFF644BPU 361 bp overlap
ChIP WTC11 ENCFF644BPU 377 bp overlap
NRL 1 dataset
Motif ES_0h ES_0h-NRL_MA0842.3 12 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 491 bp overlap
POU2F1::SOX2 1 dataset
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 365 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 650 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 305 bp overlap
Pou5f1::Sox2 1 dataset
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 158 bp overlap
RELA 2 datasets
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
Motif DE_24h DE_24h-RELA_MA0107.1 10 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 577 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 453 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 492 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 319 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 246 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 335 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 244 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 219 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 169 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 225 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 398 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 501 bp overlap
SPI1 3 datasets
ChIP K-562 GSE70482.SPI1.K-562 151 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 146 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 136 bp overlap
STAT1::STAT2 1 dataset
Motif ES_0h ES_0h-STAT1STAT2_MA0517.2 13 bp overlap
TBX19 2 datasets
Motif DE_12h DE_12h-TBX19_MA0804.2 17 bp overlap
Motif DE_24h DE_24h-TBX19_MA0804.2 17 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 239 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 288 bp overlap
TEAD1 2 datasets
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD2 1 dataset
Motif ES_0h ES_0h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 452 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP WTC11 ENCFF114TZS 341 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 221 bp overlap
TRERF1 1 dataset
ChIP WTC11 ENCFF113BUM 245 bp overlap
YY1 2 datasets
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 170 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 173 bp overlap
Yy1 1 dataset
Motif ES_0h ES_0h-Yy1_MA0095.4 8 bp overlap
ZIC1 4 datasets
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
Motif DE_24h DE_24h-ZIC1_MA0696.1 14 bp overlap
Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC4 4 datasets
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
Motif DE_24h DE_24h-ZIC4_MA0751.2 14 bp overlap
Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 4 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
Motif DE_24h DE_24h-ZIC5_MA1584.2 15 bp overlap
Motif DE_60h DE_60h-ZIC5_MA1584.2 15 bp overlap
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 357 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 205 bp overlap
ZNF331 4 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif DE_24h DE_24h-ZNF331_MA1726.2 10 bp overlap
Motif DE_60h DE_60h-ZNF331_MA1726.2 10 bp overlap
Motif DE_72h DE_72h-ZNF331_MA1726.2 10 bp overlap
ZNF416 1 dataset
ChIP WTC11 ENCFF407TAZ 271 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCFF896CCA 251 bp overlap
ZNF528 2 datasets
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
Motif DE_24h DE_24h-ZNF528_MA1597.1 17 bp overlap
ZNF532 1 dataset
ChIP WTC11 ENCFF373VBX 285 bp overlap
ZNF667 4 datasets
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
Motif DE_24h DE_24h-ZNF667_MA1984.2 11 bp overlap
Motif DE_60h DE_60h-ZNF667_MA1984.2 11 bp overlap
Motif DE_72h DE_72h-ZNF667_MA1984.2 11 bp overlap
ZNF671 1 dataset
ChIP WTC11 ENCFF053HBV 265 bp overlap
ZNF707 6 datasets
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
Motif DE_24h DE_24h-ZNF707_MA1715.1 15 bp overlap
Motif DE_24h DE_24h-ZNF707_MA1715.1 15 bp overlap
Motif DE_60h DE_60h-ZNF707_MA1715.1 15 bp overlap
Motif DE_72h DE_72h-ZNF707_MA1715.1 15 bp overlap
ZNF85 1 dataset
Motif ES_0h ES_0h-ZNF85_MA1720.2 12 bp overlap
ZSCAN18 2 datasets
ChIP WTC11 ENCFF867QWX 257 bp overlap
ChIP WTC11 ENCFF867QWX 257 bp overlap
Zfp335 4 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap
Zic1::Zic2 4 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_24h DE_24h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_72h DE_72h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 4 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap
Zic3 4 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap
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