chr4 : 40,334,992 – 40,335,409
417 bp 87 TFs 1 linked gene
This 417 bp open chromatin element is linked to CHRNA9 and is bound by 87 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CHRNA9 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:40,329,992 – 40,340,409
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
AFF4 5 datasets
ChIP HeLa GSE40632.AFF4.HeLa 417 bp overlap
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 417 bp overlap
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 264 bp overlap
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 66 bp overlap
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 417 bp overlap
AR 1 dataset
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 242 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 283 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 404 bp overlap
BRD2 3 datasets
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 417 bp overlap
ChIP SUM149PT_JQ1 GSE131097.BRD2.SUM149PT_JQ1 202 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 79 bp overlap
BRD4 16 datasets
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 266 bp overlap
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 73 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 354 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 121 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 318 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 156 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 417 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 417 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 125 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 169 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 129 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 417 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 121 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 277 bp overlap
ChIP hESC GSE33281.BRD4.hESC 73 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 72 bp overlap
CHD1 1 dataset
ChIP HeLa-S3 ENCSR392EAA.CHD1.HeLa-S3 312 bp overlap
CHD2 1 dataset
ChIP HeLa-S3 ENCSR000ECP.CHD2.HeLa-S3 131 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 417 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 352 bp overlap
CTCF 1 dataset
ChIP RH4 GSE83726.CTCF.RH4 145 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 337 bp overlap
ChIP BLaER1 ENCFF460KDD 210 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 188 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 288 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 283 bp overlap
ELL2 4 datasets
ChIP HeLa GSE40632.ELL2.HeLa 142 bp overlap
ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 190 bp overlap
ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 93 bp overlap
ChIP HeLa_DOX_EGF GSE40632.ELL2.HeLa_DOX_EGF 398 bp overlap
EP300 1 dataset
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 178 bp overlap
ESR1 2 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 272 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 271 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_24h DE_24h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 262 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 100 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 51 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 249 bp overlap
HIF1A 2 datasets
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 167 bp overlap
ChIP U2OS_DMOG GSE85096.HIF1A.U2OS_DMOG 282 bp overlap
HSF1 1 dataset
ChIP NCI-H838 GSE38901.HSF1.NCI-H838 186 bp overlap
Hand1 1 dataset
Motif DE_24h DE_24h-Hand1_MA2123.1 9 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 126 bp overlap
INTS11 1 dataset
ChIP HeLa GSE125534.INTS11.HeLa 161 bp overlap
IRF1 1 dataset
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 205 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 268 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 179 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 275 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 99 bp overlap
MAX 4 datasets
ChIP A549 ENCFF310XGQ 71 bp overlap
ChIP H1 ENCFF914VQY 236 bp overlap
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 173 bp overlap
ChIP WTC11 ENCFF223QFY 341 bp overlap
MAZ 2 datasets
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 231 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 219 bp overlap
MED1 5 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 204 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 347 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 272 bp overlap
ChIP RH4 GSE83726.MED1.RH4 97 bp overlap
ChIP U-87MG GSE36354.MED1.U-87MG 117 bp overlap
MED26 1 dataset
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 289 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 172 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 417 bp overlap
MYC 3 datasets
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 137 bp overlap
ChIP U2OS_Doxy GSE77356.MYC.U2OS_Doxy 160 bp overlap
ChIP U2OS_SHRCTR GSE77356.MYC.U2OS_SHRCTR 122 bp overlap
MYOD1 3 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 276 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 75 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 271 bp overlap
MYOG 3 datasets
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 214 bp overlap
ChIP RH4 GSE83726.MYOG.RH4 56 bp overlap
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 59 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 345 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_Triptolide-5min GSE118494.NCAPH2.IMR-90_Triptolide-5min 108 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 327 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 135 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 136 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 162 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 302 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 187 bp overlap
PHF8 2 datasets
ChIP H1 ENCFF427UFV 300 bp overlap
ChIP HeLa GSE22478.PHF8.HeLa 243 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 337 bp overlap
POLR2A 6 datasets
ChIP HeLa-S3 ENCFF045HUU 138 bp overlap
ChIP HeLa-S3 ENCFF224LWS 417 bp overlap
ChIP HeLa-S3 ENCFF455YYQ 155 bp overlap
ChIP HeLa-S3 ENCFF773DNG 233 bp overlap
ChIP PFSK-1 ENCFF576NIT 267 bp overlap
ChIP PFSK-1 ENCFF576NIT 67 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 170 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 417 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 127 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 359 bp overlap
RAD21 2 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 131 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 367 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 363 bp overlap
RCOR1 1 dataset
ChIP HeLa GSE45441.RCOR1.HeLa 217 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR138FUZ.RNF2.K-562 117 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 255 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 155 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 267 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 128 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 353 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 210 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 340 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 308 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 141 bp overlap
SMAD3 2 datasets
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 167 bp overlap
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.SMAD3.LX2_CALCIPOTRIOL_TGFB1 70 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 284 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 201 bp overlap
SMARCB1 3 datasets
ChIP proliferating-human-fibroblast GSE131711.SMARCB1.proliferating-human-fibroblast 135 bp overlap
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 165 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 161 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 324 bp overlap
ChIP HeLa-S3 ENCSR000EDM.SMARCC1.HeLa-S3 198 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 143 bp overlap
SNAI2 1 dataset
ChIP RD GSE137168.SNAI2.RD 116 bp overlap
SP5 1 dataset
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 286 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 169 bp overlap
SREBF2 1 dataset
ChIP HeLa-S3 ENCSR611WZO.SREBF2.HeLa-S3 417 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 201 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 201 bp overlap
SUPT5H 2 datasets
ChIP HeLa GSE125534.SUPT5H.HeLa 417 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 75 bp overlap
TAF1 1 dataset
ChIP HeLa-S3 ENCSR000BHT.TAF1.HeLa-S3 227 bp overlap
TBP 3 datasets
ChIP H1 ENCFF859IIO 291 bp overlap
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 187 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 125 bp overlap
THAP1 1 dataset
Motif DE_24h DE_24h-THAP1_MA0597.3 8 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 204 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 62 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 285 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 216 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 155 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 229 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 304 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 153 bp overlap
ZNF184 2 datasets
ChIP WTC11 ENCFF352POG 411 bp overlap
ChIP WTC11 ENCFF352POG 205 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 193 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 417 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 226 bp overlap
ZNF449 2 datasets
ChIP HEK293 ENCFF764ZIC 243 bp overlap
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 169 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 308 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 221 bp overlap
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