chr3 : 160,678,517 160,679,133
616 bp 98 TFs 1 linked gene
This 616 bp open chromatin element is linked to ARL14 and is bound by 98 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ARL14 1.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:160,673,517 – 160,684,133
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 243 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE104545.ARID1A.RMG-I 267 bp overlap
ARID3A 1 dataset
ChIP HepG2 ENCFF341DES 487 bp overlap
ARID4B 1 dataset
ChIP HepG2 ENCFF519OXJ 554 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 437 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 213 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 341 bp overlap
BRD2 5 datasets
ChIP NCI-H23 GSE104481.BRD2.NCI-H23 230 bp overlap
ChIP NCI-H23 GSE113714.BRD2.NCI-H23 241 bp overlap
ChIP NCI-H23 GSE104481.BRD2.NCI-H23 292 bp overlap
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 275 bp overlap
ChIP SUM149PT_JQ1 GSE131097.BRD2.SUM149PT_JQ1 218 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 102 bp overlap
BRD4 7 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 476 bp overlap
ChIP HCC1937 GSE124748.BRD4.HCC1937 486 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 571 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 157 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 214 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 443 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 214 bp overlap
BRD7 1 dataset
ChIP SUM159PT_DMSO GSE131097.BRD7.SUM159PT_DMSO 200 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 202 bp overlap
CCAR2 1 dataset
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 121 bp overlap
CDX2 4 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 128 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 347 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 362 bp overlap
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 423 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 224 bp overlap
CREBBP 2 datasets
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 132 bp overlap
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 284 bp overlap
CTCF 1 dataset
ChIP islet ERP004003.CTCF.islet 168 bp overlap
DRAP1 1 dataset
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 206 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 124 bp overlap
ELF1 2 datasets
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 280 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 272 bp overlap
ELF3 3 datasets
ChIP HepG2 ENCFF633ULY 421 bp overlap
ChIP PDAC GSE64557.ELF3.PDAC 588 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 554 bp overlap
ELL2 1 dataset
ChIP HeLa_EGF GSE40632.ELL2.HeLa_EGF 153 bp overlap
EP300 1 dataset
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 149 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 178 bp overlap
ESR1 2 datasets
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 175 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 403 bp overlap
ETV1 1 dataset
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 124 bp overlap
ETV5 1 dataset
ChIP HepG2 ENCFF456LSA 371 bp overlap
FOXA1 3 datasets
ChIP HepG2 ENCFF207NVJ 281 bp overlap
ChIP HepG2 ENCFF740VZW 285 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 334 bp overlap
FOXA2 4 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 163 bp overlap
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP HepG2 ENCFF894AYY 381 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 232 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 158 bp overlap
FOXP2 1 dataset
ChIP SK-N-MC ENCFF865YOS 285 bp overlap
FOXP4 1 dataset
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 155 bp overlap
GATA6 1 dataset
ChIP YCC-3 GSE51705.GATA6.YCC-3 224 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 465 bp overlap
HDAC2 3 datasets
ChIP PC-3 GSE147455.HDAC2.PC-3 133 bp overlap
ChIP PC-3 GSE147455.HDAC2.PC-3 224 bp overlap
ChIP PC-3_GDC-resist GSE147455.HDAC2.PC-3_GDC-resist 126 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 305 bp overlap
HNF4A 16 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 288 bp overlap
ChIP GP5D GSE51234.HNF4A.GP5D 505 bp overlap
ChIP GP5D_SIRAD21 GSE51234.HNF4A.GP5D_SIRAD21 484 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 314 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 206 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 311 bp overlap
ChIP Hep-G2 ENCSR000EEU.HNF4A.Hep-G2 120 bp overlap
ChIP HepG2 ENCFF146SSF 155 bp overlap
ChIP HepG2 ENCFF669NAM 261 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 467 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 537 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 457 bp overlap
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 197 bp overlap
ChIP liver ENCFF354NRH 405 bp overlap
ChIP liver ENCFF449HPV 427 bp overlap
ChIP liver ERP002306.HNF4A.liver 182 bp overlap
HNF4G 1 dataset
ChIP Hep-G2 ENCSR000BNJ.HNF4G.Hep-G2 184 bp overlap
HOXB8 1 dataset
ChIP PANC-1 GSE119930.HOXB8.PANC-1 594 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 419 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 291 bp overlap
KMT2A 1 dataset
ChIP THP-1 GSE79899.KMT2A.THP-1 285 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 272 bp overlap
MED1 3 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 132 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 269 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 200 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 139 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 126 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 103 bp overlap
NCOR2 1 dataset
ChIP LS180 GSE39277.NCOR2.LS180 109 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 322 bp overlap
NELFE 1 dataset
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 129 bp overlap
NFIL3 1 dataset
ChIP HepG2 ENCFF686VLI 337 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 292 bp overlap
PAXIP1 2 datasets
ChIP Hep-G2 ENCSR530ARJ.PAXIP1.Hep-G2 341 bp overlap
ChIP HepG2 ENCFF526NOJ 531 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 185 bp overlap
PHF5A 1 dataset
ChIP Hep-G2 ENCSR191TLD.PHF5A.Hep-G2 209 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 143 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 525 bp overlap
POLR2A 15 datasets
ChIP Peyer's patch ENCFF767HVN 417 bp overlap
ChIP Peyer's patch ENCFF990IYL 405 bp overlap
ChIP body of pancreas ENCFF084VJR 458 bp overlap
ChIP body of pancreas ENCFF501FEC 452 bp overlap
ChIP body of pancreas ENCFF675RCN 375 bp overlap
ChIP body of pancreas ENCFF727UBE 236 bp overlap
ChIP stomach ENCFF607ZPU 325 bp overlap
ChIP stomach ENCFF719RDO 325 bp overlap
ChIP stomach ENCFF820WZN 169 bp overlap
ChIP transverse colon ENCFF098HBD 404 bp overlap
ChIP transverse colon ENCFF193UMS 506 bp overlap
ChIP transverse colon ENCFF607LKE 290 bp overlap
ChIP transverse colon ENCFF610RWV 458 bp overlap
ChIP transverse colon ENCFF840PXT 321 bp overlap
ChIP transverse colon ENCFF964EQU 341 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 468 bp overlap
RAD21 1 dataset
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 156 bp overlap
RARA 1 dataset
ChIP HepG2 ENCFF582XUA 357 bp overlap
RELA 7 datasets
ChIP Detroit-562_Pam2CSK4 GSE91018.RELA.Detroit-562_Pam2CSK4 278 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 616 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 196 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 229 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 189 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 179 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 85 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 414 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 202 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 426 bp overlap
SMARCC1 3 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 427 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 110 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 340 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 267 bp overlap
SNAI2 1 dataset
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 278 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 357 bp overlap
SOX6 1 dataset
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 202 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 229 bp overlap
STAT3 5 datasets
ChIP FaDu_DMSO GSE78212.STAT3.FaDu_DMSO 248 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 94 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 50 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 191 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 183 bp overlap
SUPT5H 3 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 414 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 159 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 73 bp overlap
TAF1 1 dataset
ChIP K-562 ENCSR000BKS.TAF1.K-562 136 bp overlap
TARDBP 1 dataset
ChIP HepG2 ENCFF356JNC 521 bp overlap
TEAD1 3 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 233 bp overlap
ChIP HepG2 ENCFF661PNM 369 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 215 bp overlap
TEAD3 1 dataset
ChIP HepG2 ENCFF054UUL 371 bp overlap
TEAD4 2 datasets
ChIP HepG2 ENCFF250NXO 311 bp overlap
ChIP MKN28 GSE44416.TEAD4.MKN28 178 bp overlap
TFAP4 2 datasets
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 131 bp overlap
ChIP HepG2 ENCFF932XOY 178 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 140 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 156 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 437 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 410 bp overlap
ZBED4 1 dataset
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 266 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 538 bp overlap
ZBTB20 1 dataset
ChIP HepG2 ENCFF200JRV 501 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 373 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 283 bp overlap
ZNF425 1 dataset
ChIP HEK293T GSE78099.ZNF425.HEK293T 232 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 232 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 88 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 197 bp overlap
ZNF614 2 datasets
ChIP HepG2 ENCFF677IUD 485 bp overlap
ChIP HepG2 ENCFF677IUD 367 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 299 bp overlap