chr3 : 117,611,021 117,611,486
465 bp 112 TFs 0 linked genes
This 465 bp open chromatin element has no linked target genes and is bound by 112 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:117,606,021 – 117,616,486
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
112 transcription factors
Source
Cell type
AR 14 datasets
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 90 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 55 bp overlap
ChIP VCaP GSE83650.AR.VCaP 109 bp overlap
ChIP VCaP GSE98809.AR.VCaP 109 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 68 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 165 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 126 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 265 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 108 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 96 bp overlap
ChIP VCaP_R1881_10C26 GSE32892.AR.VCaP_R1881_10C26 75 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 93 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 81 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 95 bp overlap
ARID2 1 dataset
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 204 bp overlap
ASCL1 2 datasets
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 334 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 116 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 160 bp overlap
Ascl2 1 dataset
Motif DE_60h DE_60h-Ascl2_MA0816.1 10 bp overlap
BNC2 3 datasets
ChIP SK-N-SH ENCFF174EMC 355 bp overlap
ChIP SK-N-SH ENCFF174EMC 147 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 170 bp overlap
BRD4 5 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 190 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 465 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 463 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 159 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 219 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 265 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 251 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 277 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 358 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 281 bp overlap
CSRNP3 1 dataset
ChIP SK-N-SH ENCFF710BXD 258 bp overlap
DPF2 2 datasets
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 202 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 280 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 140 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 206 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 242 bp overlap
ERG 4 datasets
ChIP VCaP GSE49091.ERG.VCaP 233 bp overlap
ChIP VCaP_DHAT_2H GSE28950.ERG.VCaP_DHAT_2H 62 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 139 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 168 bp overlap
ESR1 1 dataset
ChIP endometrioid-adenocarcinoma_tumor_F GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_F 208 bp overlap
ETV2 1 dataset
Motif DE_60h DE_60h-ETV2_MA0762.2 9 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 465 bp overlap
FERD3L 1 dataset
Motif DE_60h DE_60h-FERD3L_MA1485.1 14 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 159 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 267 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 203 bp overlap
FOXA1 3 datasets
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 175 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 159 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 218 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 284 bp overlap
ChIP DE DE-FOXA2-2 294 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 360 bp overlap
GATA2 6 datasets
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 60 bp overlap
ChIP SH-SY5Y ENCFF485YIB 105 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 291 bp overlap
ChIP SK-N-SH ENCFF764OZD 235 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 281 bp overlap
GATA3 4 datasets
ChIP BE2C GSE65664.GATA3.BE2C 166 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 200 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 275 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 120 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 328 bp overlap
ChIP DE DE-GATA4-2 436 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 188 bp overlap
GATA5 1 dataset
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 364 bp overlap
ChIP DE DE-GATA6-2 453 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 283 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 406 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 289 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 306 bp overlap
GLIS3 2 datasets
ChIP SK-N-SH ENCFF370MHZ 186 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 123 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 327 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 262 bp overlap
HNF4A 1 dataset
Motif DE_60h DE_60h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_60h DE_60h-HNF4G_MA0484.3 9 bp overlap
HOXB13 2 datasets
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 171 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 112 bp overlap
Hand1 1 dataset
Motif DE_60h DE_60h-Hand1_MA2123.1 9 bp overlap
IKZF1 1 dataset
Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 308 bp overlap
ChIP SK-N-SH ENCFF285GEQ 116 bp overlap
JUND 1 dataset
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 58 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 178 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 218 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 148 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 161 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MEIS3 1 dataset
Motif DE_60h DE_60h-MEIS3_MA0775.2 7 bp overlap
MSC 1 dataset
Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 129 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 217 bp overlap
MYF5 1 dataset
Motif DE_60h DE_60h-MYF5_MA1641.2 8 bp overlap
MYF6 1 dataset
Motif DE_60h DE_60h-MYF6_MA0667.1 10 bp overlap
MYOD1 1 dataset
Motif DE_60h DE_60h-MYOD1_MA0499.3 9 bp overlap
MZF1 3 datasets
Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap
ChIP HEK293 ENCFF683ZWN 163 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 284 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 103 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 297 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 277 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 280 bp overlap
Motif DE_60h DE_60h-NEUROD1_MA1109.2 8 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 125 bp overlap
NFKB1 1 dataset
Motif DE_60h DE_60h-NFKB1_MA0105.4 13 bp overlap
NFKB2 1 dataset
Motif DE_60h DE_60h-NFKB2_MA0778.2 11 bp overlap
NR6A1 1 dataset
Motif DE_60h DE_60h-NR6A1_MA1541.2 14 bp overlap
Neurod2 2 datasets
Motif DE_60h DE_60h-Neurod2_MA0668.3 8 bp overlap
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
OSR2 2 datasets
ChIP HEK293 GSE76494.OSR2.HEK293 163 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 188 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 305 bp overlap
Olig2 1 dataset
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 465 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 465 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 50 bp overlap
Pgr 1 dataset
Motif DE_60h DE_60h-Pgr_MA2323.1 17 bp overlap
Ptf1A 1 dataset
Motif DE_60h DE_60h-Ptf1A_MA1619.2 8 bp overlap
RAD21 2 datasets
ChIP SK-N-SH ENCFF747MAS 189 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 92 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 179 bp overlap
RBPJ 1 dataset
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 230 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 263 bp overlap
REL 1 dataset
Motif DE_60h DE_60h-REL_MA0101.1 10 bp overlap
RELA 1 dataset
Motif DE_60h DE_60h-RELA_MA0107.1 10 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 405 bp overlap
Rfx6 1 dataset
Motif DE_60h DE_60h-Rfx6_MA1724.2 9 bp overlap
SMAD2 1 dataset
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 413 bp overlap
SMARCA4 5 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 465 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 295 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 236 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 255 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 244 bp overlap
SMARCC1 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 166 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 414 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH ENCFF449PID 244 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 288 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 269 bp overlap
SPIC 1 dataset
Motif DE_60h DE_60h-SPIC_MA0687.2 13 bp overlap
SS18 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 283 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 165 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 262 bp overlap
STAT1 1 dataset
Motif DE_60h DE_60h-STAT1_MA0137.4 9 bp overlap
STAT3 1 dataset
Motif DE_60h DE_60h-STAT3_MA0144.3 9 bp overlap
Sox1 1 dataset
Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap
Spi1 1 dataset
Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap
Stat4 1 dataset
Motif DE_60h DE_60h-Stat4_MA0518.2 10 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 267 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 199 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 254 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 210 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 271 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 271 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 133 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 252 bp overlap
TFAP4 1 dataset
Motif DE_60h DE_60h-TFAP4_MA0691.1 10 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 218 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 215 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 222 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 222 bp overlap
Tcf12 1 dataset
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_60h DE_60h-Tcf21_MA0832.2 10 bp overlap
Twist2 1 dataset
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 148 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 344 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 263 bp overlap
Zfp809 1 dataset
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap