chr3 : 112,084,841 112,085,276
435 bp 86 TFs 1 linked gene
This 435 bp open chromatin element is linked to C3orf52 and is bound by 86 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
C3orf52 1.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:112,079,841 – 112,090,276
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 106 bp overlap
ATF3 2 datasets
ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 128 bp overlap
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 155 bp overlap
BRD4 2 datasets
ChIP CHL-1_BAY123897 GSE95585.BRD4.CHL-1_BAY123897 351 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 181 bp overlap
CASZ1 2 datasets
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 435 bp overlap
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 309 bp overlap
CCAR2 1 dataset
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 129 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 158 bp overlap
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 239 bp overlap
CEBPA 1 dataset
ChIP HepG2 ENCFF175DFS 206 bp overlap
CEBPB 2 datasets
ChIP Hep-G2 ENCSR000BQI.CEBPB.Hep-G2 188 bp overlap
ChIP HepG2 ENCFF074JWB 201 bp overlap
CREBBP 1 dataset
ChIP LS180_125 GSE39277.CREBBP.LS180_125 152 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 137 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 110 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 357 bp overlap
ESR1 1 dataset
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 242 bp overlap
ETS1 3 datasets
ChIP HUVEC-C GSE41166.ETS1.HUVEC-C 182 bp overlap
ChIP Hep-G2 ENCSR681WHQ.ETS1.Hep-G2 131 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 283 bp overlap
EZH2 1 dataset
ChIP SF8628 GSE94834.EZH2.SF8628 380 bp overlap
FOS 5 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 295 bp overlap
ChIP Hep-G2 ENCSR177HDZ.FOS.Hep-G2 186 bp overlap
ChIP K-562 ENCSR000DKB.FOS.K-562 173 bp overlap
ChIP MCF-7 ENCFF282FWZ 147 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 310 bp overlap
FOSL1 1 dataset
ChIP HepG2 ENCFF095FBN 296 bp overlap
FOSL2 9 datasets
ChIP A-549 ENCSR000BQO.FOSL2.A-549 241 bp overlap
ChIP A549 ENCFF651PDH 300 bp overlap
ChIP Hep-G2 ENCSR000BHP.FOSL2.Hep-G2 221 bp overlap
ChIP HepG2 ENCFF548CXY 263 bp overlap
ChIP HepG2 ENCFF796NIA 157 bp overlap
ChIP MCF-7 ENCFF188KBZ 435 bp overlap
ChIP MCF-7 ENCFF188KBZ 287 bp overlap
ChIP MCF-7 ENCSR546KCN.FOSL2.MCF-7 266 bp overlap
ChIP MCF-7 ENCSR000BUI.FOSL2.MCF-7 120 bp overlap
FOXA1 1 dataset
ChIP LS180 GSE140533.FOXA1.LS180 87 bp overlap
FOXA2 1 dataset
ChIP Caco-2 GSE66218.FOXA2.Caco-2 318 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 164 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 147 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 401 bp overlap
GATA3 2 datasets
ChIP MCF-7 ENCFF352QVM 345 bp overlap
ChIP MCF-7 ENCFF437NQS 346 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 332 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 399 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 271 bp overlap
ChIP DE DE-GATA6-2 276 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 294 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 308 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 256 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 222 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 308 bp overlap
ChIP foregut GSE117136.GATA6.foregut 396 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 266 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 340 bp overlap
HDAC2 4 datasets
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 228 bp overlap
ChIP K-562 ENCSR000BMG.HDAC2.K-562 172 bp overlap
ChIP K562 ENCFF738SPU 225 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 216 bp overlap
HIF1A 1 dataset
ChIP U2OS_DMSO GSE85096.HIF1A.U2OS_DMSO 224 bp overlap
HNF4A 15 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 326 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 188 bp overlap
ChIP HCCLM3_High-Glucose GSE101553.HNF4A.HCCLM3_High-Glucose 223 bp overlap
ChIP HCCLM3_Low-Glucose GSE101553.HNF4A.HCCLM3_Low-Glucose 213 bp overlap
ChIP HCT-116 GSE62890.HNF4A.HCT-116 273 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 220 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 219 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 197 bp overlap
ChIP Hep-G2 ENCSR000EEU.HNF4A.Hep-G2 173 bp overlap
ChIP HepG2 ENCFF146SSF 276 bp overlap
ChIP HepG2 ENCFF669NAM 232 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 425 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 346 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 176 bp overlap
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 291 bp overlap
HNF4G 2 datasets
ChIP Hep-G2 ENCSR000BNJ.HNF4G.Hep-G2 176 bp overlap
ChIP HepG2 ENCFF323ATZ 257 bp overlap
JUN 5 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 199 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 218 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 240 bp overlap
ChIP Hep-G2 ENCSR000EEK.JUN.Hep-G2 174 bp overlap
ChIP keratinocyte_CHD4-KD GSE139685.JUN.keratinocyte_CHD4-KD 151 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 375 bp overlap
JUND 9 datasets
ChIP HT29_DSMO GSE77039.JUND.HT29_DSMO 259 bp overlap
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 149 bp overlap
ChIP Hep-G2 ENCSR000BGK.JUND.Hep-G2 204 bp overlap
ChIP HepG2 ENCFF172HFZ 245 bp overlap
ChIP HepG2 ENCFF448MMC 293 bp overlap
ChIP HepG2 ENCFF869OPW 247 bp overlap
ChIP Kasumi-1_ctrl GSE117105.JUND.Kasumi-1_ctrl 159 bp overlap
ChIP SK-N-SH ENCFF971JKN 278 bp overlap
ChIP SK-N-SH ENCSR000EIB.JUND.SK-N-SH 162 bp overlap
KDM1A 1 dataset
ChIP K-562 GSE117944.KDM1A.K-562 240 bp overlap
KLF5 2 datasets
ChIP ESO-26 GSE132680.KLF5.ESO-26 223 bp overlap
ChIP KATO-III GSE51705.KLF5.KATO-III 155 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 219 bp overlap
MED1 2 datasets
ChIP G296S GSE85628.MED1.G296S 86 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 86 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 153 bp overlap
MYOD1 5 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 141 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 217 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 415 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 287 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 148 bp overlap
NCOR1 2 datasets
ChIP LS180 GSE39277.NCOR1.LS180 190 bp overlap
ChIP LS180_125 GSE39277.NCOR1.LS180_125 223 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 197 bp overlap
NEUROG2 2 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 171 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 190 bp overlap
NR1H2 2 datasets
ChIP HT29_GW3965_2H GSE77039.NR1H2.HT29_GW3965_2H 206 bp overlap
ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 258 bp overlap
NR2F1 1 dataset
ChIP HepG2 ENCFF518ZRY 334 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 181 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 198 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 249 bp overlap
POLR2A 2 datasets
ChIP transverse colon ENCFF193UMS 315 bp overlap
ChIP transverse colon ENCFF610RWV 280 bp overlap
PPARG 3 datasets
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 158 bp overlap
ChIP HT29_ROSIG_48H GSE77039.PPARG.HT29_ROSIG_48H 173 bp overlap
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 160 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 162 bp overlap
PROX1 3 datasets
ChIP HepG2 ENCFF016ZJS 362 bp overlap
ChIP HepG2 ENCFF016ZJS 159 bp overlap
ChIP SW480 GSE60390.PROX1.SW480 212 bp overlap
RAD21 1 dataset
ChIP GP5D GSE51234.RAD21.GP5D 141 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 104 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 114 bp overlap
RXRB 1 dataset
ChIP HepG2 ENCFF539ZAY 313 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 119 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 318 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 433 bp overlap
SKI 1 dataset
ChIP Hep-G2 ENCSR754MUD.SKI.Hep-G2 215 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 359 bp overlap
SMAD3 2 datasets
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 127 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 183 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 270 bp overlap
ChIP HepG2 ENCFF615GTE 277 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 89 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 72 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 150 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 120 bp overlap
SNAI2 6 datasets
ChIP SMS-CTR GSE137168.SNAI2.SMS-CTR 231 bp overlap
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 259 bp overlap
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 243 bp overlap
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 386 bp overlap
ChIP keratinocyte_SHCTR GSE55421.SNAI2.keratinocyte_SHCTR 190 bp overlap
ChIP keratinocyte_SNAI2 GSE55421.SNAI2.keratinocyte_SNAI2 194 bp overlap
SP1 1 dataset
ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 98 bp overlap
SP5 1 dataset
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 170 bp overlap
TBX5 3 datasets
ChIP G296S GSE85628.TBX5.G296S 266 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 266 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 185 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 247 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 164 bp overlap
THRB 2 datasets
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 250 bp overlap
ChIP HepG2 ENCFF476INC 370 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 303 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF265CEM 435 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 239 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 179 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 233 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 169 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 74 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 140 bp overlap
ZSCAN5C 1 dataset
ChIP HEK293 ENCFF343DTU 351 bp overlap