chr1 : 60,942,876 60,943,412
536 bp 93 TFs 0 linked genes
This 536 bp open chromatin element has no linked target genes and is bound by 93 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:60,937,876 – 60,948,412
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP GSE80256.AR.LNCaP 184 bp overlap
ChIP THP-1_R1881 GSE131381.AR.THP-1_R1881 107 bp overlap
ARNTL 2 datasets
ChIP U2OS GSE44236.ARNTL.U2OS 160 bp overlap
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 249 bp overlap
ATF3 1 dataset
ChIP K-562 ENCSR028UIU.ATF3.K-562 80 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCFF037PYH 234 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 201 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 89 bp overlap
BCL11A 2 datasets
ChIP GM12878 ENCFF717YPR 156 bp overlap
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 103 bp overlap
BCL6 1 dataset
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 258 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 274 bp overlap
BRD3 1 dataset
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 352 bp overlap
BRD4 7 datasets
ChIP HCC1937 GSE124748.BRD4.HCC1937 507 bp overlap
ChIP HUVEC-C GSE53998.BRD4.HUVEC-C 122 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 315 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 184 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 147 bp overlap
ChIP MV4-11_IBET_SGC GSE71776.BRD4.MV4-11_IBET_SGC 270 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 283 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 117 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 261 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 191 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 227 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 251 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCFF681AJV 267 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 144 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF167CZS 62 bp overlap
ELF1 3 datasets
ChIP GM12878 ENCFF692SMY 307 bp overlap
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 274 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 163 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 274 bp overlap
EP300 1 dataset
ChIP GM12878 ENCFF039QRE 137 bp overlap
ERG 2 datasets
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 133 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 365 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
FLI1 1 dataset
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 205 bp overlap
FOS 2 datasets
ChIP MCF-7 ENCFF282FWZ 187 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 143 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 235 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 111 bp overlap
IKZF1 3 datasets
ChIP GM12878 ENCFF753XDO 175 bp overlap
ChIP GM12878 ENCFF824TGK 118 bp overlap
ChIP K-562 ENCSR395HWC.IKZF1.K-562 69 bp overlap
IKZF2 6 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
ChIP GM12878 ENCFF918AID 71 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 150 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 129 bp overlap
IRF4 3 datasets
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 103 bp overlap
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 66 bp overlap
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 128 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 151 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 98 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 282 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 425 bp overlap
KMT2A 1 dataset
ChIP THP-1 GSE79899.KMT2A.THP-1 269 bp overlap
KMT2B 2 datasets
ChIP AML GSE112074.KMT2B.AML 179 bp overlap
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 253 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 157 bp overlap
MAF 1 dataset
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 249 bp overlap
MEF2A 1 dataset
ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 115 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 181 bp overlap
MEIS1 1 dataset
ChIP SEM GSE38339.MEIS1.SEM 50 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 127 bp overlap
ChIP K562 ENCFF320GSD 183 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 270 bp overlap
MYB 2 datasets
ChIP THP-1 GSE90769.MYB.THP-1 185 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 138 bp overlap
MYOG 1 dataset
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 288 bp overlap
Mafb 2 datasets
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
Motif DE_36h DE_36h-Mafb_MA0117.3 11 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 338 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 305 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 471 bp overlap
NFYA 2 datasets
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap
NFYC 2 datasets
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
Motif DE_36h DE_36h-NFYC_MA1644.2 7 bp overlap
NR2C1 1 dataset
ChIP K-562 ENCSR178DEG.NR2C1.K-562 207 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 444 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 199 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 212 bp overlap
POU2F2 1 dataset
ChIP GM12878 ENCFF207RKY 234 bp overlap
PPARA::RXRA 2 datasets
Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap
Motif DE_36h DE_36h-PPARARXRA_MA1148.2 17 bp overlap
Pparg::Rxra 2 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_36h DE_36h-PpargRxra_MA0065.3 13 bp overlap
RAD21 1 dataset
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 158 bp overlap
RELA 2 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 125 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 133 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 277 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 267 bp overlap
SMAD2 3 datasets
ChIP hESC GSE29422.SMAD2.hESC 151 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 480 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 288 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 255 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 332 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 440 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 407 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 369 bp overlap
SMAD3 1 dataset
ChIP hESC GSE29422.SMAD3.hESC 152 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 222 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 257 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 239 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 415 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 89 bp overlap
SNAI2 2 datasets
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 283 bp overlap
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 193 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 244 bp overlap
SPI1 21 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 149 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 163 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 87 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 139 bp overlap
ChIP GM12878 ENCFF134LCP 125 bp overlap
ChIP GM12891 ENCFF563IUT 87 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 120 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 117 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 146 bp overlap
ChIP K562 ENCFF410ORC 124 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 122 bp overlap
ChIP OCI-Ly10 GSE56857.SPI1.OCI-Ly10 128 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 169 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 132 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 103 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 119 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 82 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 117 bp overlap
ChIP primary-monocyte_4h_donorO GSE128834.SPI1.primary-monocyte_4h_donorO 114 bp overlap
ChIP primary-monocyte_LPS-4h_donorO GSE128834.SPI1.primary-monocyte_LPS-4h_donorO 118 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 80 bp overlap
SPIB 5 datasets
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap
ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 121 bp overlap
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 259 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 210 bp overlap
STAT3 1 dataset
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 64 bp overlap
Stat5a 1 dataset
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
TAL1 2 datasets
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 205 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 155 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 84 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 194 bp overlap
TBX5 1 dataset
ChIP hiPSC GSE81585.TBX5.hiPSC 240 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCFF467DDW 60 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 218 bp overlap
YY1AP1 1 dataset
ChIP PC-9_2DF_DMSO GSE131687.YY1AP1.PC-9_2DF_DMSO 171 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 492 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 225 bp overlap
ZNF217 2 datasets
ChIP GM12878 ENCFF978IGL 212 bp overlap
ChIP GM12878 ENCSR764CZW.ZNF217.GM12878 139 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF331 2 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif DE_36h DE_36h-ZNF331_MA1726.2 10 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 283 bp overlap
ZNF528 2 datasets
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
Motif DE_36h DE_36h-ZNF528_MA1597.1 17 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 536 bp overlap
ZSCAN18 1 dataset
ChIP WTC11 ENCFF867QWX 257 bp overlap