chr2 : 230,717,532 230,717,998
466 bp 109 TFs 2 linked genes
This 466 bp open chromatin element is linked to CAB39 and BANF1P3 and is bound by 109 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CAB39 4.7 kb Proximal Proximity
BANF1P3 7.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:230,712,532 – 230,722,998
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
109 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 221 bp overlap
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 251 bp overlap
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 316 bp overlap
ATF3 1 dataset
ChIP K-562 ENCSR028UIU.ATF3.K-562 309 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 275 bp overlap
BRD4 1 dataset
ChIP OCI-Ly1_JQ1 GSE53601.BRD4.OCI-Ly1_JQ1 226 bp overlap
CASZ1 2 datasets
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 235 bp overlap
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 201 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 233 bp overlap
CEBPA 1 dataset
ChIP MV4-11 GSE88746.CEBPA.MV4-11 336 bp overlap
CEBPB 3 datasets
ChIP IMR-90 ENCFF468UGY 251 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 141 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 168 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 405 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 266 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 180 bp overlap
CTCF 2 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
CTNNB1 1 dataset
ChIP LS180_125 GSE31939.CTNNB1.LS180_125 135 bp overlap
Cebpa 12 datasets
ChIP BLaER1 ENCFF031ISE 436 bp overlap
ChIP BLaER1 ENCFF093OYK 428 bp overlap
ChIP BLaER1 ENCFF140EYR 403 bp overlap
ChIP BLaER1 ENCFF274GAT 415 bp overlap
ChIP BLaER1 ENCFF335XTP 379 bp overlap
ChIP BLaER1 ENCFF346MCV 187 bp overlap
ChIP BLaER1 ENCFF364PUR 437 bp overlap
ChIP BLaER1 ENCFF399AYC 435 bp overlap
ChIP BLaER1 ENCFF508JZF 363 bp overlap
ChIP BLaER1 ENCFF798NMV 297 bp overlap
ChIP BLaER1 ENCFF844FIP 300 bp overlap
ChIP BLaER1 ENCFF858JKM 384 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 244 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 355 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 182 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 262 bp overlap
EOMES 2 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 361 bp overlap
EP300 1 dataset
ChIP 697 GSE138031.EP300.697 135 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 196 bp overlap
FLI1 1 dataset
ChIP SEM GSE117864.FLI1.SEM 151 bp overlap
FOXA1 2 datasets
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
ChIP LNCaP_M253K GSE133386.FOXA1.LNCaP_M253K 100 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
ChIP SU-DHL-6 ERP010999.FOXP1.SU-DHL-6 302 bp overlap
GLIS2 1 dataset
Motif DE_12h DE_12h-GLIS2_MA0736.1 14 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 363 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 360 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 263 bp overlap
JMJD1C 2 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 232 bp overlap
ChIP NB4 GSE63484.JMJD1C.NB4 263 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 290 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 285 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 282 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 336 bp overlap
KMT2A 5 datasets
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 283 bp overlap
ChIP L826 GSE83671.KMT2A.L826 291 bp overlap
ChIP MV4-11 GSE79899.KMT2A.MV4-11 212 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 272 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 362 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 296 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 333 bp overlap
MEF2B 1 dataset
ChIP DLBCL GSE110682.MEF2B.DLBCL 228 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 381 bp overlap
MTA2 2 datasets
ChIP RH4 GSE155861.MTA2.RH4 376 bp overlap
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 207 bp overlap
MXI1 1 dataset
ChIP GM12878 ENCFF666NJR 374 bp overlap
MYB 3 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 305 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 320 bp overlap
ChIP THP-1 GSE90769.MYB.THP-1 282 bp overlap
MYOD1 3 datasets
ChIP RD GSE137168.MYOD1.RD 232 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 247 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 239 bp overlap
MYOG 1 dataset
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 366 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 425 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 188 bp overlap
NCOR1 1 dataset
ChIP LS180 GSE39277.NCOR1.LS180 80 bp overlap
NEUROG2 5 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 278 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 323 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 404 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 177 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 280 bp overlap
NKX2-3 1 dataset
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR3C1 1 dataset
ChIP NALM-6 GSE67046.NR3C1.NALM-6 241 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
PAX5 3 datasets
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 179 bp overlap
ChIP NALM-6 GSE126300.PAX5.NALM-6 431 bp overlap
ChIP NALM-6 GSE115764.PAX5.NALM-6 367 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 406 bp overlap
POLR2A 7 datasets
ChIP GM12878 ENCFF412KAE 466 bp overlap
ChIP GM12878 ENCFF412KAE 321 bp overlap
ChIP GM12878 ENCFF521FXC 447 bp overlap
ChIP GM12891 ENCFF379FCI 447 bp overlap
ChIP HL-60 ENCFF321XKE 463 bp overlap
ChIP K562 ENCFF262YXJ 434 bp overlap
ChIP K562 ENCFF262YXJ 354 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 245 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 310 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap
RAD21 1 dataset
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 435 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 349 bp overlap
RBFOX2 1 dataset
ChIP HepG2 ENCFF939HTZ 466 bp overlap
RUNX1 5 datasets
ChIP 697 GSE138031.RUNX1.697 379 bp overlap
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 438 bp overlap
ChIP Kasumi-1 GSE45738.RUNX1.Kasumi-1 363 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 441 bp overlap
ChIP U-937 GSE65427.RUNX1.U-937 142 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 273 bp overlap
RUNX2 1 dataset
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 196 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 371 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 357 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 405 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 377 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 300 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 217 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 216 bp overlap
SMARCA4 3 datasets
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 277 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 466 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 157 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 372 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
STAT5A 1 dataset
ChIP MV4-11 GSE64862.STAT5A.MV4-11 175 bp overlap
SUPT5H 2 datasets
ChIP K562 ENCFF902PAW 371 bp overlap
ChIP K562 ENCFF902PAW 172 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX21 3 datasets
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 244 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 171 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TCF12 2 datasets
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 121 bp overlap
ChIP Kasumi-1 GSE43834.TCF12.Kasumi-1 165 bp overlap
TCF3 4 datasets
ChIP 697_HF GSE138031.TCF3.697_HF 357 bp overlap
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 260 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 450 bp overlap
ChIP SEM GSE85988.TCF3.SEM 254 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 246 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 107 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 141 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 281 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
YY1 1 dataset
ChIP K-562 ENCSR000BMH.YY1.K-562 103 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 260 bp overlap
ZNF18 3 datasets
ChIP HEK293 ENCFF066NGR 221 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 313 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 193 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 136 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap