chr2 : 226,862,802 – 226,863,131
329 bp 95 TFs 0 linked genes
This 329 bp open chromatin element has no linked target genes and is bound by 95 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:226,857,802 – 226,868,131
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
95 transcription factors
Source
Cell type
AHR 2 datasets
ChIP GM01310_3MC GSE116632.AHR.GM01310_3MC 120 bp overlap
ChIP GM01310_DMSO GSE116632.AHR.GM01310_DMSO 100 bp overlap
ARID1A 2 datasets
ChIP RMG-I GSE104545.ARID1A.RMG-I 150 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 121 bp overlap
ATF2 1 dataset
ChIP GM12878 ENCFF521LQJ 187 bp overlap
ATF4 1 dataset
Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 258 bp overlap
BCL11A 1 dataset
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 75 bp overlap
BCLAF1 1 dataset
ChIP GM12878 ENCFF306JRM 189 bp overlap
BHLHE40 5 datasets
ChIP GM12878 ENCFF010ZUU 217 bp overlap
ChIP GM12878 ENCFF521IZR 186 bp overlap
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 252 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 202 bp overlap
ChIP GM12878 ENCSR000DZJ.BHLHE40.GM12878 119 bp overlap
BRD4 5 datasets
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 71 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 60 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 87 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 132 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 329 bp overlap
CBFA2T3 1 dataset
ChIP K562 ENCFF673OEZ 103 bp overlap
CBFB 2 datasets
ChIP GM12878 ENCFF056JUS 270 bp overlap
ChIP GM12878 ENCSR860UHK.CBFB.GM12878 123 bp overlap
CBX3 1 dataset
ChIP HCT116 ENCFF947BOL 106 bp overlap
CBX5 1 dataset
ChIP GM12878 ENCFF542UDC 149 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 123 bp overlap
CEBPG 1 dataset
Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap
CLOCK 1 dataset
ChIP BA40_0 GSE96659.CLOCK.BA40_0 151 bp overlap
CREB1 1 dataset
ChIP GM12878 ENCSR000BUF.CREB1.GM12878 95 bp overlap
CREM 1 dataset
ChIP GM12878 ENCFF391UGE 155 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 300 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 86 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 329 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 123 bp overlap
EED 2 datasets
ChIP GM12878 ENCFF266FYW 283 bp overlap
ChIP GM12878 ENCFF266FYW 329 bp overlap
ESR1 5 datasets
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 170 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 170 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 170 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 85 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 169 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 192 bp overlap
ETV6 2 datasets
ChIP GM12878 GSE97661.ETV6.GM12878 100 bp overlap
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 118 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOSL2 1 dataset
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
FOXM1 2 datasets
ChIP GM12878 ENCFF264DJE 244 bp overlap
ChIP GM12878 ENCSR000BRU.FOXM1.GM12878 63 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 165 bp overlap
ChIP GM12878 ENCFF824TGK 329 bp overlap
IKZF2 4 datasets
ChIP GM12878 ENCFF238LYK 329 bp overlap
ChIP GM12878 ENCFF918AID 327 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 164 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 189 bp overlap
IRF4 2 datasets
ChIP GM12878 ENCFF769ZDL 267 bp overlap
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 108 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 50 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MAX 1 dataset
ChIP HCT116 ENCFF810LEN 181 bp overlap
MEF2A 1 dataset
ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 141 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 172 bp overlap
MEF2C 2 datasets
ChIP GM12878 ENCFF473ASZ 84 bp overlap
ChIP GM12878 ENCSR000BNG.MEF2C.GM12878 103 bp overlap
MITF 7 datasets
ChIP 501-mel GSE137522.MITF.501-mel 276 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 181 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 297 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 240 bp overlap
ChIP 501-mel_K243R GSE137522.MITF.501-mel_K243R 264 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 225 bp overlap
ChIP K562 ENCFF731XJJ 319 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 108 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 329 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 329 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 215 bp overlap
MZF1 2 datasets
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 329 bp overlap
NFIC 4 datasets
ChIP GM12878 ENCFF259FWL 214 bp overlap
ChIP GM12878 ENCFF259FWL 329 bp overlap
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 220 bp overlap
ChIP K-562 ENCSR796ITY.NFIC.K-562 53 bp overlap
NFYB 1 dataset
ChIP GM12878 ENCFF474DNH 286 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 193 bp overlap
NR2F1 3 datasets
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
ChIP GM12878 ENCFF273VKX 153 bp overlap
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 264 bp overlap
NR3C1 1 dataset
ChIP GM12878 ENCSR904YPP.NR3C1.GM12878 75 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 137 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 290 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 138 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
PKNOX1 1 dataset
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 322 bp overlap
POLR2A 1 dataset
ChIP gastroesophageal sphincter ENCFF461UHJ 314 bp overlap
PRDM10 3 datasets
ChIP HEK293 ENCFF145WQQ 265 bp overlap
ChIP K-562 ENCSR120MPG.PRDM10.K-562 218 bp overlap
ChIP K562 ENCFF740YLK 317 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
RAD51 2 datasets
ChIP GM12878 ENCFF916JXQ 192 bp overlap
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 220 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 188 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
RUNX2 1 dataset
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 134 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 140 bp overlap
SIX2 1 dataset
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 83 bp overlap
SMARCA4 3 datasets
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 241 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 180 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 158 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPI1 5 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 205 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 187 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 172 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 152 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 186 bp overlap
SRF 4 datasets
ChIP GM12878 ENCFF565AWY 104 bp overlap
ChIP GM12878 ENCFF878IIX 178 bp overlap
ChIP GM12878 ENCSR041XML.SRF.GM12878 71 bp overlap
ChIP GM12878 ENCSR000BMI.SRF.GM12878 101 bp overlap
TAL1 1 dataset
ChIP K562 ENCFF620GMX 88 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 329 bp overlap
TCF12 3 datasets
ChIP GM12878 ENCFF506WWB 118 bp overlap
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 70 bp overlap
ChIP K562 ENCFF931DJY 99 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 232 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
USF1 6 datasets
ChIP GM12878 ENCFF880HJL 170 bp overlap
ChIP GM12878 ENCSR000BGI.USF1.GM12878 123 bp overlap
ChIP H1 ENCFF090WVU 179 bp overlap
ChIP HCT-116 ENCSR000BVK.USF1.HCT-116 132 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 150 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 198 bp overlap
USF2 2 datasets
ChIP GM12878 GSE97661.USF2.GM12878 207 bp overlap
ChIP GM12878 ENCSR000DZU.USF2.GM12878 120 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 329 bp overlap
YY1 3 datasets
ChIP GM12891 ENCFF460SIS 229 bp overlap
ChIP GM12891 ENCFF460SIS 220 bp overlap
ChIP GM12891 ENCSR000BKJ.YY1.GM12891 91 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF143 1 dataset
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 193 bp overlap
ZNF24 2 datasets
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ChIP K562 ENCFF877JCX 93 bp overlap
ZNF274 1 dataset
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 187 bp overlap
ZNF394 2 datasets
ChIP HEK293 ENCFF236OPX 203 bp overlap
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 129 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 105 bp overlap
ZNF770 2 datasets
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ZSCAN21 1 dataset
ChIP HEK293 ENCSR253CKN.ZSCAN21.HEK293 65 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
Huangfu Lab · Publications · Resources · Contact