chr2 : 166,365,989 – 166,366,823
834 bp 104 TFs 1 linked gene
This 834 bp open chromatin element is linked to SCN9A and is bound by 104 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SCN9A 9.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:166,360,989 – 166,371,823
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K-562 ENCSR426URK.AFF1.K-562 274 bp overlap
AR 1 dataset
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 96 bp overlap
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 395 bp overlap
ARID1B 3 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 686 bp overlap
ChIP K562 ENCFF938UXQ 192 bp overlap
ChIP K562 ENCFF938UXQ 149 bp overlap
ARID3A 1 dataset
ChIP K562 ENCFF728CDS 117 bp overlap
ARNTL 2 datasets
ChIP U2OS GSE130602.ARNTL.U2OS 253 bp overlap
ChIP U2OS_DMSO GSE130506.ARNTL.U2OS_DMSO 253 bp overlap
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 66 bp overlap
ATF7 1 dataset
ChIP K-562 ENCSR972ZBV.ATF7.K-562 248 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 144 bp overlap
BRD4 3 datasets
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 183 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 208 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 199 bp overlap
CEBPA 1 dataset
ChIP MV4-11 GSE88746.CEBPA.MV4-11 181 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 312 bp overlap
DACH1 2 datasets
ChIP K-562 ENCSR030TJP.DACH1.K-562 202 bp overlap
ChIP K562 ENCFF574LOW 378 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 233 bp overlap
EOMES 3 datasets
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 301 bp overlap
EP300 1 dataset
ChIP K562 ENCFF226VMS 133 bp overlap
ESR1 2 datasets
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 301 bp overlap
ChIP T-47D_CR3flp GSE99479.ESR1.T-47D_CR3flp 238 bp overlap
ETV1 1 dataset
ChIP COLO-800 GSE80443.ETV1.COLO-800 385 bp overlap
FIGLA 2 datasets
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOSL1 2 datasets
ChIP BT-549 GSE112961.FOSL1.BT-549 228 bp overlap
ChIP BT-549 GSE46166.FOSL1.BT-549 302 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 441 bp overlap
ChIP DE DE-FOXA2-2 290 bp overlap
FOXL2 1 dataset
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 314 bp overlap
GATA1 6 datasets
ChIP K-562 GSE107726.GATA1.K-562 225 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 164 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 164 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 88 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 189 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 322 bp overlap
GATA2 3 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 364 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 349 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 189 bp overlap
GATA3 1 dataset
ChIP thymocyte GSE71751.GATA3.thymocyte 215 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 298 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 195 bp overlap
ChIP DE DE-GATA4-1 537 bp overlap
ChIP DE DE-GATA4-2 732 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 495 bp overlap
ChIP DE DE-GATA6-2 781 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 427 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 641 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 291 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 768 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 736 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 370 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 473 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 228 bp overlap
GATAD2A 1 dataset
ChIP K562 ENCFF071LJW 345 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 137 bp overlap
GMEB1 3 datasets
ChIP K-562 ENCSR928KOR.GMEB1.K-562 249 bp overlap
ChIP K562 ENCFF705LHX 309 bp overlap
ChIP K562 ENCFF705LHX 510 bp overlap
HDAC1 3 datasets
ChIP K-562 ENCSR711VWL.HDAC1.K-562 310 bp overlap
ChIP K-562 ENCSR387UWP.HDAC1.K-562 352 bp overlap
ChIP K562 ENCFF928TKZ 413 bp overlap
HDAC2 3 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 285 bp overlap
ChIP K-562 ENCSR075HTM.HDAC2.K-562 261 bp overlap
ChIP K562 ENCFF744ALD 310 bp overlap
HNF1A 1 dataset
ChIP HEE_1 GSE76376.HNF1A.HEE_1 174 bp overlap
HOXB8 1 dataset
ChIP K-562 GSE121208.HOXB8.K-562 116 bp overlap
IKZF1 4 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 321 bp overlap
ChIP K562 ENCFF348IBL 238 bp overlap
ChIP K562 ENCFF348IBL 261 bp overlap
ChIP K562 ENCFF771OHZ 71 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 215 bp overlap
ISL2 1 dataset
Motif DE_60h DE_60h-ISL2_MA0914.2 6 bp overlap
JUND 4 datasets
Motif DE_48h DE_48h-JUND_MA0492.2 11 bp overlap
Motif DE_60h DE_60h-JUND_MA0492.2 11 bp overlap
ChIP K562 ENCFF336RCR 290 bp overlap
ChIP K562 ENCFF830LVJ 71 bp overlap
KDM1A 2 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 312 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 122 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 355 bp overlap
MAX 1 dataset
ChIP K-562 ENCSR000EFV.MAX.K-562 112 bp overlap
MED1 3 datasets
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 189 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 203 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 225 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 478 bp overlap
ChIP K562 ENCFF320GSD 345 bp overlap
MGA 2 datasets
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
MNT 1 dataset
ChIP K562 ENCFF820IGH 458 bp overlap
MSC 2 datasets
Motif DE_48h DE_48h-MSC_MA0665.1 10 bp overlap
Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap
MTA1 1 dataset
ChIP K-562 ENCSR807BGP.MTA1.K-562 294 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR411UYA.MTA2.K-562 267 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 301 bp overlap
MYF6 2 datasets
Motif DE_48h DE_48h-MYF6_MA0667.1 10 bp overlap
Motif DE_60h DE_60h-MYF6_MA0667.1 10 bp overlap
MYOD1 3 datasets
Motif DE_48h DE_48h-MYOD1_MA0499.3 9 bp overlap
Motif DE_60h DE_60h-MYOD1_MA0499.3 9 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 177 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 466 bp overlap
NCOR1 1 dataset
ChIP K-562 ENCSR798ILC.NCOR1.K-562 133 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 253 bp overlap
NFIC 4 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 324 bp overlap
ChIP K562 ENCFF167YID 263 bp overlap
ChIP SK-N-SH ENCFF965AKM 271 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 250 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 214 bp overlap
Nkx3-1 2 datasets
Motif DE_48h DE_48h-Nkx3-1_MA0124.3 7 bp overlap
Motif DE_60h DE_60h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 2 datasets
Motif DE_48h DE_48h-Nkx3-2_MA0122.4 10 bp overlap
Motif DE_60h DE_60h-Nkx3-2_MA0122.4 10 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 391 bp overlap
ChIP K562 ENCFF286KMN 240 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 281 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 497 bp overlap
ChIP K562 ENCFF236IUS 391 bp overlap
PKNOX2 2 datasets
Motif DE_48h DE_48h-PKNOX2_MA0783.1 12 bp overlap
Motif DE_60h DE_60h-PKNOX2_MA0783.1 12 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 174 bp overlap
Ptf1A 2 datasets
Motif DE_48h DE_48h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_60h DE_60h-Ptf1A_MA1620.2 8 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 252 bp overlap
SCRT1 2 datasets
Motif DE_48h DE_48h-SCRT1_MA0743.3 10 bp overlap
Motif DE_60h DE_60h-SCRT1_MA0743.3 10 bp overlap
SCRT2 2 datasets
Motif DE_48h DE_48h-SCRT2_MA0744.3 10 bp overlap
Motif DE_60h DE_60h-SCRT2_MA0744.3 10 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 559 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 383 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 327 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 464 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 312 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 75 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 79 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 233 bp overlap
ChIP K562 ENCFF506JCB 169 bp overlap
SMARCA5 1 dataset
ChIP K-562 ENCSR895HSJ.SMARCA5.K-562 142 bp overlap
SMARCC2 1 dataset
ChIP K-562 ENCSR519WMW.SMARCC2.K-562 119 bp overlap
SMARCE1 2 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 312 bp overlap
ChIP K562 ENCFF690CFF 263 bp overlap
SNAI2 2 datasets
Motif DE_48h DE_48h-SNAI2_MA0745.3 8 bp overlap
Motif DE_60h DE_60h-SNAI2_MA0745.3 8 bp overlap
SNAI3 2 datasets
Motif DE_48h DE_48h-SNAI3_MA1559.2 9 bp overlap
Motif DE_60h DE_60h-SNAI3_MA1559.2 9 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 303 bp overlap
ChIP K562 ENCFF059YCJ 299 bp overlap
STAT3 5 datasets
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 157 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 100 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 178 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 215 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 176 bp overlap
STAT5A 1 dataset
ChIP K-562 ENCSR000BRR.STAT5A.K-562 132 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TBR1 2 datasets
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
TBX1 2 datasets
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
TBX18 2 datasets
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX21 2 datasets
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX3 2 datasets
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TBX4 2 datasets
Motif DE_48h DE_48h-TBX4_MA0806.1 8 bp overlap
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
TBX5 2 datasets
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
TEAD1 1 dataset
ChIP adipocyte GSE140782.TEAD1.adipocyte 150 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 211 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 193 bp overlap
TGIF1 2 datasets
Motif DE_48h DE_48h-TGIF1_MA0796.1 12 bp overlap
Motif DE_60h DE_60h-TGIF1_MA0796.1 12 bp overlap
TGIF2 2 datasets
Motif DE_48h DE_48h-TGIF2_MA0797.1 12 bp overlap
Motif DE_60h DE_60h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 2 datasets
Motif DE_48h DE_48h-TGIF2LX_MA1571.1 12 bp overlap
Motif DE_60h DE_60h-TGIF2LX_MA1571.1 12 bp overlap
THAP7 1 dataset
ChIP K562 ENCFF018XUY 361 bp overlap
Tbx6 2 datasets
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
ZBTB2 1 dataset
ChIP K562 ENCFF290ESQ 132 bp overlap
ZBTB40 4 datasets
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 227 bp overlap
ChIP K-562 ENCSR158RYZ.ZBTB40.K-562 84 bp overlap
ChIP K562 ENCFF337GJB 211 bp overlap
ChIP K562 ENCFF521DSV 155 bp overlap
ZEB1 2 datasets
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZEB2 4 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 751 bp overlap
ChIP K-562 ENCSR322CFO.ZEB2.K-562 823 bp overlap
ChIP K562 ENCFF795CMH 271 bp overlap
ChIP K562 ENCFF975RXS 182 bp overlap
ZNF24 1 dataset
ChIP K562 ENCFF877JCX 118 bp overlap
ZNF592 1 dataset
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 232 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 137 bp overlap
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