chr2 : 118,835,006 118,835,648
642 bp 102 TFs 1 linked gene
This 642 bp open chromatin element is linked to LINC01956 and is bound by 102 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01956 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:118,830,006 – 118,840,648
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
102 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 418 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 316 bp overlap
BRD2 2 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 97 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 217 bp overlap
BRD4 9 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 290 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 189 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 334 bp overlap
ChIP HCC1937 GSE124748.BRD4.HCC1937 518 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 208 bp overlap
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 323 bp overlap
ChIP SUM229PE_neg_DMSO_24h GSE87418.BRD4.SUM229PE_neg_DMSO_24h 176 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 201 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 293 bp overlap
CBFB 3 datasets
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 137 bp overlap
ChIP ME-1 GSE46044.CBFB.ME-1 225 bp overlap
ChIP ME-1 GSE46044.CBFB.ME-1 221 bp overlap
CDX2 1 dataset
ChIP LS180 GSE31939.CDX2.LS180 146 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 638 bp overlap
CREBBP 1 dataset
ChIP LS180_125 GSE39277.CREBBP.LS180_125 92 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 354 bp overlap
ChIP H1 ENCFF329MAX 551 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 146 bp overlap
DDX5 2 datasets
ChIP BT-549 GSE112961.DDX5.BT-549 109 bp overlap
ChIP BT-549 GSE112961.DDX5.BT-549 156 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 350 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 194 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 485 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 126 bp overlap
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 146 bp overlap
ERG 5 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 199 bp overlap
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 201 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 200 bp overlap
ChIP VCaP GSE83650.ERG.VCaP 250 bp overlap
ChIP VCaP GSE98809.ERG.VCaP 250 bp overlap
ESR1 5 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 270 bp overlap
ChIP Ishikawa GSE99905.ESR1.Ishikawa 249 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 300 bp overlap
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 231 bp overlap
ChIP MCF-7_shCTRL GSE132432.ESR1.MCF-7_shCTRL 131 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 199 bp overlap
ETS1 2 datasets
ChIP SCC-25 GSE109884.ETS1.SCC-25 149 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 496 bp overlap
EZH2 31 datasets
ChIP A673 ENCFF790MVL 67 bp overlap
ChIP A673 ENCFF955JRZ 107 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 185 bp overlap
ChIP GM23338 ENCFF613YON 642 bp overlap
ChIP GM23338 ENCFF886DXX 642 bp overlap
ChIP H1 ENCFF232NZA 642 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 573 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 371 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 100 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 328 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 211 bp overlap
ChIP SK-N-MC ENCFF434OHW 152 bp overlap
ChIP astrocyte ENCFF365JTP 415 bp overlap
ChIP astrocyte ENCFF365JTP 507 bp overlap
ChIP astrocyte ENCFF365JTP 186 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 642 bp overlap
ChIP fibroblast of lung ENCFF479BAW 184 bp overlap
ChIP hESC GSE113817.EZH2.hESC 639 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 339 bp overlap
ChIP hepatocyte ENCFF118DKH 317 bp overlap
ChIP hepatocyte ENCFF552DZB 642 bp overlap
ChIP hepatocyte ENCFF552DZB 642 bp overlap
ChIP keratinocyte ENCFF070STK 154 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 332 bp overlap
ChIP neural cell ENCFF610EPB 144 bp overlap
ChIP neural cell ENCFF610EPB 386 bp overlap
ChIP neural progenitor cell ENCFF018MKA 642 bp overlap
ChIP neural progenitor cell ENCFF472NFV 642 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 553 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 239 bp overlap
ChIP prostate-cancer_shEZH2 GSE107780.EZH2.prostate-cancer_shEZH2 233 bp overlap
FOXA1 2 datasets
ChIP LS180 GSE140533.FOXA1.LS180 314 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 240 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 289 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 207 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 270 bp overlap
HDAC2 2 datasets
ChIP WA01 ENCSR000AVB.HDAC2.WA01 194 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 169 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 167 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 234 bp overlap
HNF1B 1 dataset
ChIP Hep-G2 ENCSR127XTZ.HNF1B.Hep-G2 224 bp overlap
HNRNPK 1 dataset
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 187 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 244 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 129 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 323 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 103 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 222 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 299 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 93 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 298 bp overlap
KDM4A 4 datasets
ChIP H1 ENCFF078LED 176 bp overlap
ChIP H1 ENCFF078LED 266 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 229 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 129 bp overlap
KDM5B 2 datasets
ChIP HCC2157 GSE46055.KDM5B.HCC2157 550 bp overlap
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 276 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 197 bp overlap
ChIP HepG2 ENCFF507HCX 488 bp overlap
MED1 3 datasets
ChIP SGBS GSE64233.MED1.SGBS 353 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 184 bp overlap
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 183 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 219 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 170 bp overlap
MTA1 2 datasets
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 350 bp overlap
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 109 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 263 bp overlap
MYB 2 datasets
ChIP U-937_ATRA-treated_MYB GSE98006.MYB.U-937_ATRA-treated_MYB 234 bp overlap
ChIP U-937_ATRA-treated_MYB GSE98006.MYB.U-937_ATRA-treated_MYB 243 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 642 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 181 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 217 bp overlap
NCOR1 2 datasets
ChIP LS180 GSE39277.NCOR1.LS180 171 bp overlap
ChIP LS180 GSE39277.NCOR1.LS180 93 bp overlap
NR2F2 1 dataset
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 250 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 195 bp overlap
NUTM1 2 datasets
ChIP NUT_MZ1 GSE133122.NUTM1.NUT_MZ1 175 bp overlap
ChIP NUT_MZ1 GSE133122.NUTM1.NUT_MZ1 93 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 642 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 180 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 298 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 276 bp overlap
PCBP1 4 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 455 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 304 bp overlap
ChIP K-562 ENCSR052PTN.PCBP1.K-562 220 bp overlap
ChIP K-562 GSE120104.PCBP1.K-562 194 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 308 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 150 bp overlap
PHF8 2 datasets
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 163 bp overlap
ChIP WA01 ENCSR000ATK.PHF8.WA01 134 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 564 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 642 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 87 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 263 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 320 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 642 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 195 bp overlap
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 106 bp overlap
RARA 2 datasets
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 157 bp overlap
ChIP U-937_ATRA-treated_RAR GSE98006.RARA.U-937_ATRA-treated_RAR 323 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 575 bp overlap
RBM39 5 datasets
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 509 bp overlap
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 301 bp overlap
ChIP HepG2 ENCFF084YZE 122 bp overlap
ChIP HepG2 ENCFF801JUH 329 bp overlap
ChIP HepG2 ENCFF801JUH 120 bp overlap
RBPJ 2 datasets
ChIP HCC1599 GSE116871.RBPJ.HCC1599 468 bp overlap
ChIP HCC1599_GSI GSE116871.RBPJ.HCC1599_GSI 583 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 642 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 243 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 272 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 642 bp overlap
RUNX1 2 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 84 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 84 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 131 bp overlap
SIRT6 2 datasets
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 58 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 503 bp overlap
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 52 bp overlap
SMAD2_3 3 datasets
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 404 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 75 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 320 bp overlap
SMARCA4 5 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 395 bp overlap
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 109 bp overlap
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 111 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 118 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 231 bp overlap
SMARCC1 6 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 585 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 207 bp overlap
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 642 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 349 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 535 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 101 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 295 bp overlap
SREBP2 3 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 313 bp overlap
ChIP HCC70 GSE126380.SREBP2.HCC70 271 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 243 bp overlap
SRSF7 1 dataset
ChIP Hep-G2 GSE120104.SRSF7.Hep-G2 371 bp overlap
SS18 5 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 311 bp overlap
ChIP Aska-SS GSE108025.SS18.Aska-SS 64 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 478 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 638 bp overlap
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 235 bp overlap
STAT3 4 datasets
ChIP A139 GSE85579.STAT3.A139 98 bp overlap
ChIP HCC1143_EtOH GSE85579.STAT3.HCC1143_EtOH 259 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 139 bp overlap
ChIP WA01 ERP004237.STAT3.WA01 204 bp overlap
SUZ12 8 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 114 bp overlap
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 349 bp overlap
ChIP H1 ENCFF881NFR 642 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 257 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 505 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 635 bp overlap
ChIP NT2/D1 ENCFF574SXS 227 bp overlap
ChIP ProEs GSE59087.SUZ12.ProEs 125 bp overlap
TAF15 2 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 234 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 162 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 204 bp overlap
TBP 1 dataset
ChIP H1 ENCFF859IIO 302 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 159 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 533 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 238 bp overlap
TP53 1 dataset
ChIP GM06170 GSE55727.TP53.GM06170 52 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 177 bp overlap
TRIM28 3 datasets
ChIP AF22 GSE84259.TRIM28.AF22 475 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 326 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 342 bp overlap
VDR 1 dataset
ChIP LS180_125 GSE31939.VDR.LS180_125 313 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 642 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 121 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 619 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 215 bp overlap
ZFX 2 datasets
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 97 bp overlap
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 442 bp overlap
ZNF148 1 dataset
ChIP K-562 GSE121133.ZNF148.K-562 200 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 198 bp overlap