chr2 : 96,642,571 96,642,984
413 bp 100 TFs 2 linked genes
This 413 bp open chromatin element is linked to FER1L5 and KANSL3 and is bound by 100 transcription factors.
Linked Genes
2 genes
Distance
Gene Expression Dist. to TSS Distance Link type
FER1L5 at TSS At TSS Proximity
KANSL3 4.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:96,637,571 – 96,647,984
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 413 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 413 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 184 bp overlap
BMI1 2 datasets
ChIP K-562 ENCSR782WRO.BMI1.K-562 131 bp overlap
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 343 bp overlap
BMPR1A 1 dataset
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 219 bp overlap
BRD3 2 datasets
ChIP HEK293T GSE39579.BRD3.HEK293T 254 bp overlap
ChIP U-87MG_GBM GSE99171.BRD3.U-87MG_GBM 215 bp overlap
BRD4 5 datasets
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 220 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 225 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 273 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 342 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 301 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 189 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP MCF-7 ENCFF570JPP 241 bp overlap
CTCF 5 datasets
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 186 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 147 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 169 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 221 bp overlap
ChIP neural cell ENCFF335ADI 380 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 271 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 314 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 152 bp overlap
EHF 1 dataset
Motif DE_48h DE_48h-EHF_MA0598.4 9 bp overlap
ELF1 10 datasets
ChIP A-549 GSE122203.ELF1.A-549 207 bp overlap
Motif DE_48h DE_48h-ELF1_MA0473.4 9 bp overlap
ChIP Hep-G2 ENCSR000BMZ.ELF1.Hep-G2 133 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 263 bp overlap
ChIP K562 ENCFF496AKI 277 bp overlap
ChIP MCF-7 ENCFF305BNP 383 bp overlap
ChIP MCF-7 ENCSR000BSS.ELF1.MCF-7 201 bp overlap
ChIP MCF-7 ENCSR502NRF.ELF1.MCF-7 194 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 397 bp overlap
ChIP SK-N-MC_SHGFP_96H GSE61944.ELF1.SK-N-MC_SHGFP_96H 371 bp overlap
ELF3 4 datasets
Motif DE_48h DE_48h-ELF3_MA0640.3 9 bp overlap
ChIP PDAC GSE64557.ELF3.PDAC 409 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 413 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 413 bp overlap
ELK1 1 dataset
Motif DE_48h DE_48h-ELK1_MA0028.3 9 bp overlap
ELK4 1 dataset
Motif DE_48h DE_48h-ELK4_MA0076.3 9 bp overlap
ERF 1 dataset
Motif DE_48h DE_48h-ERF_MA0760.2 9 bp overlap
ESR1 1 dataset
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 171 bp overlap
ETS1 3 datasets
Motif DE_48h DE_48h-ETS1_MA0098.4 9 bp overlap
ChIP GM23338 ENCFF701IZH 377 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 218 bp overlap
ETS2 1 dataset
Motif DE_48h DE_48h-ETS2_MA1484.2 9 bp overlap
ETV1 3 datasets
Motif DE_48h DE_48h-ETV1_MA0761.3 9 bp overlap
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 325 bp overlap
ChIP GIST-T1 GSE80443.ETV1.GIST-T1 188 bp overlap
ETV2 1 dataset
Motif DE_48h DE_48h-ETV2_MA0762.2 9 bp overlap
ETV3 1 dataset
Motif DE_48h DE_48h-ETV3_MA0763.2 9 bp overlap
ETV4 1 dataset
Motif DE_48h DE_48h-ETV4_MA0764.4 9 bp overlap
ETV6 1 dataset
Motif DE_48h DE_48h-ETV6_MA0645.2 9 bp overlap
ETV7 1 dataset
Motif DE_48h DE_48h-ETV7_MA1708.2 9 bp overlap
Elf5 1 dataset
Motif DE_48h DE_48h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_48h DE_48h-Erg_MA0474.4 10 bp overlap
FEV 1 dataset
Motif DE_48h DE_48h-FEV_MA0156.4 9 bp overlap
FLI1 5 datasets
ChIP A-673 GSE99959.FLI1.A-673 223 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 263 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 219 bp overlap
Motif DE_48h DE_48h-FLI1_MA0475.3 9 bp overlap
ChIP SK-N-MC_SHGFP_48H GSE61944.FLI1.SK-N-MC_SHGFP_48H 207 bp overlap
GABPA 3 datasets
Motif DE_48h DE_48h-GABPA_MA0062.4 10 bp overlap
ChIP K-562 ENCSR000BLO.GABPA.K-562 189 bp overlap
ChIP MCF-7 ENCSR000BUK.GABPA.MCF-7 266 bp overlap
GABPB1 2 datasets
ChIP K-562 ENCSR138YYY.GABPB1.K-562 409 bp overlap
ChIP K562 ENCFF015GDS 314 bp overlap
GATA6 1 dataset
ChIP AGS GSE51936.GATA6.AGS 149 bp overlap
IKZF1 2 datasets
Motif DE_48h DE_48h-IKZF1_MA1508.2 8 bp overlap
ChIP K-562 ENCSR395HWC.IKZF1.K-562 337 bp overlap
IKZF2 1 dataset
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_48h DE_48h-Ikzf3_MA1992.2 9 bp overlap
JUN 2 datasets
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 134 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 184 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 413 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 299 bp overlap
KDM5B 2 datasets
ChIP SUM159 GSE46055.KDM5B.SUM159 125 bp overlap
ChIP SUM185 GSE46055.KDM5B.SUM185 144 bp overlap
KLF13 1 dataset
Motif DE_48h DE_48h-KLF13_MA0657.2 17 bp overlap
MED1 1 dataset
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 188 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_48h DE_48h-MEIS2_MA0774.1 8 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 261 bp overlap
MXI1 2 datasets
ChIP neural ENCSR934NHU.MXI1.neural 348 bp overlap
ChIP neural cell ENCFF623HQN 397 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 275 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 238 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 284 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 299 bp overlap
ChIP K562 ENCFF286KMN 360 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 236 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 256 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 193 bp overlap
ChIP islet ERP001456.PDX1.islet 193 bp overlap
PGR 1 dataset
Motif DE_48h DE_48h-PGR_MA2327.1 9 bp overlap
PHF8 1 dataset
ChIP WA01 ENCSR000ATK.PHF8.WA01 155 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 264 bp overlap
PKNOX1 7 datasets
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 213 bp overlap
ChIP HEK293T ENCFF174WDB 189 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 291 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 367 bp overlap
ChIP K562 ENCFF236IUS 328 bp overlap
ChIP MCF-7 ENCFF116OCS 105 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 297 bp overlap
POLR2A 14 datasets
ChIP GM23338 ENCFF450WCS 275 bp overlap
ChIP H1 ENCFF566JSR 261 bp overlap
ChIP H1 ENCFF833NJP 384 bp overlap
ChIP H54 ENCFF398BXN 281 bp overlap
ChIP SK-N-MC ENCFF088IVG 193 bp overlap
ChIP body of pancreas ENCFF501FEC 413 bp overlap
ChIP body of pancreas ENCFF675RCN 413 bp overlap
ChIP neural cell ENCFF604SPB 153 bp overlap
ChIP prostate gland ENCFF545MVF 413 bp overlap
ChIP prostate gland ENCFF545MVF 261 bp overlap
ChIP prostate gland ENCFF881OMH 204 bp overlap
ChIP stomach ENCFF820WZN 324 bp overlap
ChIP thyroid gland ENCFF979LRR 413 bp overlap
ChIP vagina ENCFF384GAB 281 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 175 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 362 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 402 bp overlap
ChIP neural cell ENCFF882LXX 413 bp overlap
RFX1 9 datasets
ChIP HepG2 ENCFF144SCF 366 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 413 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 413 bp overlap
ChIP K562 ENCFF421AVO 413 bp overlap
ChIP K562 ENCFF809XVG 413 bp overlap
ChIP MCF-7 ENCFF782EZS 368 bp overlap
ChIP MCF-7 ENCFF973QAD 351 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 386 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 362 bp overlap
RFX3 1 dataset
ChIP Hep-G2 ENCSR633OVO.RFX3.Hep-G2 153 bp overlap
RFX4 1 dataset
Motif DE_48h DE_48h-RFX4_MA0799.3 13 bp overlap
RFX7 1 dataset
Motif DE_48h DE_48h-RFX7_MA1554.2 8 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 252 bp overlap
Rfx6 1 dataset
Motif DE_48h DE_48h-Rfx6_MA1724.2 9 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 366 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 271 bp overlap
SMC3 1 dataset
ChIP neural cell ENCFF795YGY 413 bp overlap
SOX10 1 dataset
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 233 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 165 bp overlap
SOX8 1 dataset
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 136 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 166 bp overlap
SPI1 3 datasets
ChIP K-562 ENCSR000BGW.SPI1.K-562 179 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 140 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
SPIB 1 dataset
Motif DE_48h DE_48h-SPIB_MA0081.3 13 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 301 bp overlap
Spi1 1 dataset
Motif DE_48h DE_48h-Spi1_MA0080.7 13 bp overlap
TAF1 3 datasets
ChIP H1 ENCFF478SZO 413 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 345 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 326 bp overlap
TAF3 1 dataset
ChIP HCT-116 GSE43539.TAF3.HCT-116 207 bp overlap
TBP 4 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 301 bp overlap
ChIP hESC GSE122298.TBP.hESC 230 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 117 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 146 bp overlap
ZBTB11 1 dataset
Motif DE_48h DE_48h-ZBTB11_MA2329.1 9 bp overlap
ZBTB7A 1 dataset
Motif DE_48h DE_48h-ZBTB7A_MA0750.3 9 bp overlap
ZNF175 1 dataset
Motif DE_48h DE_48h-ZNF175_MA2332.1 9 bp overlap
ZNF707 1 dataset
Motif DE_48h DE_48h-ZNF707_MA1715.1 15 bp overlap
Zbtb2 1 dataset
Motif DE_48h DE_48h-Zbtb2_MA2340.1 10 bp overlap