chr21 : 37,041,546 37,042,235
689 bp 119 TFs 4 linked genes
This 689 bp open chromatin element is linked to 4 target genes and is bound by 119 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
PIGP 31.2 kb Distal Multiome
TTC3 31.2 kb Distal Multiome
HLCS 51.8 kb Distal Multiome
VPS26C 225.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr21:37,036,546 – 37,047,235
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
119 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP GSE63202.AR.LNCaP 187 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 135 bp overlap
ASCL1 6 datasets
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 203 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 171 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 178 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 247 bp overlap
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 182 bp overlap
ATF3 2 datasets
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 68 bp overlap
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 130 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 225 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 245 bp overlap
BRD4 5 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 241 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 430 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 525 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 420 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 240 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 130 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 155 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 227 bp overlap
CTCF 1 dataset
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 213 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 251 bp overlap
Crx 2 datasets
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
EBF1 1 dataset
Motif DE_72h DE_72h-EBF1_MA0154.5 11 bp overlap
EBF3 1 dataset
Motif DE_72h DE_72h-EBF3_MA1637.2 9 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 137 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 159 bp overlap
EOMES 1 dataset
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
ESR1 7 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 316 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 238 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 169 bp overlap
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 159 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 256 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 488 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 557 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 573 bp overlap
Ebf4 1 dataset
Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOSL2 1 dataset
Motif DE_72h DE_72h-FOSL2_MA0478.2 10 bp overlap
FOXA1 4 datasets
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 200 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 257 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 183 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 264 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 436 bp overlap
ChIP DE DE-FOXA2-2 490 bp overlap
FOXC2 1 dataset
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_72h DE_72h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_72h DE_72h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_72h DE_72h-FOXE1_MA1487.3 12 bp overlap
FOXH1 1 dataset
Motif DE_72h DE_72h-FOXH1_MA0479.2 8 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 126 bp overlap
Foxq1 1 dataset
Motif DE_72h DE_72h-Foxq1_MA0040.2 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 276 bp overlap
ChIP DE DE-GATA4-2 388 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 427 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 250 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 274 bp overlap
GSC 2 datasets
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 197 bp overlap
Gli2 1 dataset
Motif DE_72h DE_72h-Gli2_MA0734.4 9 bp overlap
HDAC2 2 datasets
ChIP PC-3 GSE147455.HDAC2.PC-3 123 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 291 bp overlap
ISL2 1 dataset
Motif DE_72h DE_72h-ISL2_MA0914.2 6 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 345 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 238 bp overlap
KLF16 1 dataset
Motif DE_72h DE_72h-KLF16_MA0741.1 11 bp overlap
KLF17 1 dataset
Motif DE_72h DE_72h-KLF17_MA1514.2 14 bp overlap
KLF9 1 dataset
Motif DE_72h DE_72h-KLF9_MA1107.3 11 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 145 bp overlap
LIN54 1 dataset
Motif DE_72h DE_72h-LIN54_MA0619.2 7 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 361 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 343 bp overlap
MGA 2 datasets
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
ChIP HepG2 ENCFF057YJE 225 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 252 bp overlap
MYC 3 datasets
ChIP GP5D GSE51234.MYC.GP5D 420 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 292 bp overlap
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 136 bp overlap
MYOD1 3 datasets
Motif DE_72h DE_72h-MYOD1_MA0499.3 9 bp overlap
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 364 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 202 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 263 bp overlap
NFATC3 1 dataset
ChIP Hep-G2 GSE97661.NFATC3.Hep-G2 286 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 300 bp overlap
NKX2-3 1 dataset
Motif DE_72h DE_72h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_72h DE_72h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_72h DE_72h-NKX2-8_MA0673.2 8 bp overlap
Nkx3-1 1 dataset
Motif DE_72h DE_72h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 1 dataset
Motif DE_72h DE_72h-Nkx3-2_MA0122.4 10 bp overlap
OTX1 2 datasets
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap
ChIP WTC11 ENCFF634NAO 238 bp overlap
PHOX2A 1 dataset
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
PITX1 2 datasets
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
PLAG1 2 datasets
Motif DE_72h DE_72h-PLAG1_MA0163.1 14 bp overlap
ChIP K-562 GSE111469.PLAG1.K-562 192 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 166 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 297 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 145 bp overlap
PRDM9 1 dataset
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
PROP1 1 dataset
Motif DE_72h DE_72h-PROP1_MA0715.1 11 bp overlap
RAD21 1 dataset
ChIP GP5D GSE51234.RAD21.GP5D 345 bp overlap
REST 1 dataset
Motif DE_72h DE_72h-REST_MA0138.3 20 bp overlap
RHOXF1 2 datasets
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RREB1 1 dataset
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 314 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 512 bp overlap
SMARCA4 2 datasets
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 316 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 193 bp overlap
SNAI2 2 datasets
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 144 bp overlap
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 263 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 304 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 573 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_72h DE_72h-SP8_MA0747.2 11 bp overlap
SP9 1 dataset
Motif DE_72h DE_72h-SP9_MA1564.2 10 bp overlap
SREBF1 1 dataset
Motif DE_72h DE_72h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_72h DE_72h-SREBF2_MA0596.1 10 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 204 bp overlap
TAF1 1 dataset
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 63 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 138 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TCF3 2 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 427 bp overlap
ChIP NPC GSE154479.TCF3.NPC 340 bp overlap
TCF4 3 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 126 bp overlap
Motif DE_72h DE_72h-TCF4_MA0830.3 8 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 138 bp overlap
THAP1 1 dataset
Motif DE_72h DE_72h-THAP1_MA0597.3 8 bp overlap
TP63 7 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 160 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 134 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 255 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 308 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 172 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 221 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 186 bp overlap
Wt1 1 dataset
Motif DE_72h DE_72h-Wt1_MA1627.2 10 bp overlap
YY1 1 dataset
ChIP HEK293T_control GSE128106.YY1.HEK293T_control 409 bp overlap
ZBTB7C 1 dataset
Motif DE_72h DE_72h-ZBTB7C_MA0695.2 8 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 427 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 225 bp overlap
ZKSCAN3 1 dataset
Motif DE_72h DE_72h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF121 1 dataset
ChIP HepG2 ENCFF343YSL 77 bp overlap
ZNF135 1 dataset
Motif DE_72h DE_72h-ZNF135_MA1587.1 14 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 170 bp overlap
ZNF354C 2 datasets
Motif DE_72h DE_72h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_72h DE_72h-ZNF354C_MA0130.1 6 bp overlap
ZNF416 1 dataset
Motif DE_72h DE_72h-ZNF416_MA1979.2 10 bp overlap
ZNF460 1 dataset
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
ZNF549 1 dataset
Motif DE_72h DE_72h-ZNF549_MA1728.2 8 bp overlap
ZNF740 1 dataset
Motif DE_72h DE_72h-ZNF740_MA0753.3 10 bp overlap
Zfp809 1 dataset
Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap