chr20 : 54,850,889 – 54,852,173
1,284 bp 104 TFs 0 linked genes
This 1.3 kb open chromatin element has no linked target genes and is bound by 104 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:54,845,889 – 54,857,173
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
BCL6 1 dataset
Motif DE_48h DE_48h-BCL6_MA0463.3 13 bp overlap
BCLAF1 3 datasets
ChIP K-562 ENCSR792IYC.BCLAF1.K-562 297 bp overlap
ChIP K-562 ENCSR792IYC.BCLAF1.K-562 284 bp overlap
ChIP K-562 ENCSR492LTS.BCLAF1.K-562 265 bp overlap
BHLHE22 2 datasets
Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
CBX1 2 datasets
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 313 bp overlap
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 664 bp overlap
COPS2 1 dataset
ChIP MCF-7 ENCFF628TEZ 385 bp overlap
CTCF 19 datasets
ChIP C4-2B ENCFF821XVN 685 bp overlap
ChIP C4-2B ENCFF821XVN 483 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 461 bp overlap
ChIP MCF-7 ENCFF162GNE 245 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 389 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 296 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 251 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 136 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 184 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 187 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 252 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 142 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 118 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 386 bp overlap
ChIP RWPE2 ENCFF911IEE 364 bp overlap
ChIP endodermal cell ENCFF471YCZ 163 bp overlap
DDX20 1 dataset
ChIP MCF-7 ENCFF142TOQ 245 bp overlap
EBF1 2 datasets
Motif DE_48h DE_48h-EBF1_MA0154.5 11 bp overlap
Motif DE_60h DE_60h-EBF1_MA0154.5 11 bp overlap
ELF1 1 dataset
ChIP MCF-7 ENCFF305BNP 389 bp overlap
ELF3 2 datasets
Motif DE_48h DE_48h-ELF3_MA0640.3 9 bp overlap
Motif DE_60h DE_60h-ELF3_MA0640.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 272 bp overlap
ESR1 2 datasets
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 83 bp overlap
ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 131 bp overlap
ETV1 2 datasets
Motif DE_48h DE_48h-ETV1_MA0761.3 9 bp overlap
Motif DE_60h DE_60h-ETV1_MA0761.3 9 bp overlap
EWSR1 2 datasets
ChIP K-562 ENCSR142YYA.EWSR1.K-562 209 bp overlap
ChIP K-562 ENCSR142YYA.EWSR1.K-562 806 bp overlap
EWSR1-FLI1 3 datasets
Motif DE_48h DE_48h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_72h DE_72h-EWSR1-FLI1_MA0149.1 18 bp overlap
Ebf4 2 datasets
Motif DE_48h DE_48h-Ebf4_MA2122.1 11 bp overlap
Motif DE_60h DE_60h-Ebf4_MA2122.1 11 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 937 bp overlap
ChIP DE DE-FOXA2-2 560 bp overlap
FOXM1 1 dataset
ChIP MCF-7 ENCSR000BUJ.FOXM1.MCF-7 137 bp overlap
Foxl2 2 datasets
Motif DE_48h DE_48h-Foxl2_MA1607.2 10 bp overlap
Motif DE_60h DE_60h-Foxl2_MA1607.2 10 bp overlap
GATA1 2 datasets
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
GATA2 4 datasets
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 191 bp overlap
GATA3 8 datasets
ChIP MCF-7 ENCFF352QVM 306 bp overlap
ChIP MCF-7 ENCFF437NQS 165 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 557 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 474 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 221 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 203 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 495 bp overlap
ChIP T47D-A1-2_EtOH GSE112491.GATA3.T47D-A1-2_EtOH 164 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 242 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 890 bp overlap
ChIP DE DE-GATA4-2 1014 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 370 bp overlap
GATA5 3 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 1044 bp overlap
ChIP DE DE-GATA6-2 931 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 272 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 688 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 332 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 641 bp overlap
Gata3 3 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Gfi1B 2 datasets
Motif DE_48h DE_48h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_60h DE_60h-Gfi1B_MA0483.2 10 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 230 bp overlap
HNF1A 2 datasets
Motif DE_48h DE_48h-HNF1A_MA0046.3 13 bp overlap
Motif DE_60h DE_60h-HNF1A_MA0046.3 13 bp overlap
IKZF2 2 datasets
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
IRF2 3 datasets
Motif DE_48h DE_48h-IRF2_MA0051.2 16 bp overlap
Motif DE_60h DE_60h-IRF2_MA0051.2 16 bp overlap
Motif DE_72h DE_72h-IRF2_MA0051.2 16 bp overlap
Ikzf3 2 datasets
Motif DE_48h DE_48h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_60h DE_60h-Ikzf3_MA1992.2 9 bp overlap
JUND 1 dataset
ChIP MCF-7 ENCFF450KFZ 401 bp overlap
MEIS1 3 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MSX2 2 datasets
ChIP MCF-7 ENCFF179YRV 225 bp overlap
ChIP MCF-7 ENCFF179YRV 297 bp overlap
MXI1 1 dataset
Motif DE_48h DE_48h-MXI1_MA1108.3 6 bp overlap
NBN 1 dataset
ChIP MCF-7 ENCFF608GKP 281 bp overlap
NFATC3 3 datasets
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
NFATC4 2 datasets
Motif DE_48h DE_48h-NFATC4_MA1525.3 9 bp overlap
Motif DE_60h DE_60h-NFATC4_MA1525.3 9 bp overlap
NFIA 1 dataset
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
NFRKB 1 dataset
ChIP MCF-7 ENCFF465QUH 311 bp overlap
NFXL1 1 dataset
ChIP MCF-7 ENCFF505SHB 338 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 170 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 141 bp overlap
Neurod2 2 datasets
Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Nfat5 1 dataset
Motif DE_48h DE_48h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 3 datasets
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 3 datasets
Motif DE_48h DE_48h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_48h DE_48h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_60h DE_60h-Nfatc2_MA0152.3 8 bp overlap
Olig2 2 datasets
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
PBX3 2 datasets
Motif DE_48h DE_48h-PBX3_MA1114.2 11 bp overlap
Motif DE_60h DE_60h-PBX3_MA1114.2 11 bp overlap
PML 1 dataset
ChIP MCF-7 ENCFF839EHA 222 bp overlap
PPP1R10 1 dataset
ChIP MCF-7 ENCFF027ROL 344 bp overlap
Prdm5 3 datasets
Motif DE_48h DE_48h-Prdm5_MA1999.2 11 bp overlap
Motif DE_60h DE_60h-Prdm5_MA1999.2 11 bp overlap
Motif DE_72h DE_72h-Prdm5_MA1999.2 11 bp overlap
RAD21 6 datasets
ChIP GP5D GSE51234.RAD21.GP5D 437 bp overlap
ChIP MCF-7 ENCFF694KOM 337 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 210 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 217 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 136 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 125 bp overlap
RARA 1 dataset
Motif DE_48h DE_48h-RARA_MA0729.1 18 bp overlap
RB1 2 datasets
ChIP GM12878 ENCSR916BOH.RB1.GM12878 80 bp overlap
ChIP GM12878 ENCSR916BOH.RB1.GM12878 278 bp overlap
RBPJ 1 dataset
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
RFX1 1 dataset
ChIP K-562 ENCSR968GIB.RFX1.K-562 136 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCFF521RDC 194 bp overlap
SIX4 1 dataset
ChIP MCF-7 ENCFF919BLX 353 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 181 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 784 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 398 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 369 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SMARCA5 1 dataset
ChIP MCF-7 ENCFF666AAW 261 bp overlap
SMC1A 1 dataset
ChIP MCF-7 GSE115602.SMC1A.MCF-7 140 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 596 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 549 bp overlap
STAG1 2 datasets
ChIP MCF-7 ERP000209.STAG1.MCF-7 127 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 115 bp overlap
STAT3 1 dataset
Motif DE_48h DE_48h-STAT3_MA0144.3 9 bp overlap
Sox17 1 dataset
Motif DE_48h DE_48h-Sox17_MA0078.3 10 bp overlap
Sox7 1 dataset
Motif DE_48h DE_48h-Sox7_MA2095.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 281 bp overlap
TAF1 2 datasets
ChIP MCF-7 ENCFF091WNP 392 bp overlap
ChIP MCF-7 ENCFF091WNP 405 bp overlap
TBP 1 dataset
Motif DE_48h DE_48h-TBP_MA0108.3 7 bp overlap
TEAD4 1 dataset
ChIP A-549 ENCSR000BUD.TEAD4.A-549 147 bp overlap
TRIM22 2 datasets
ChIP MCF-7 ENCFF596XRL 371 bp overlap
ChIP MCF-7 ENCFF596XRL 250 bp overlap
TRPS1 3 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
TSC22D1 1 dataset
ChIP MCF-7 ENCFF552PAC 251 bp overlap
TSC22D2 2 datasets
ChIP MCF-7 ENCFF588BUN 270 bp overlap
ChIP MCF-7 ENCFF588BUN 297 bp overlap
Tcf12 2 datasets
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
YBX1 1 dataset
ChIP MCF-7 ENCFF783FFV 361 bp overlap
ZBTB11 2 datasets
ChIP K562 ENCFF694AXU 277 bp overlap
ChIP K562 ENCFF694AXU 206 bp overlap
ZBTB18 1 dataset
Motif DE_48h DE_48h-ZBTB18_MA0698.2 11 bp overlap
ZBTB40 1 dataset
ChIP MCF-7 ENCFF044DWL 451 bp overlap
ZFX 2 datasets
ChIP MCF-7 ENCFF009NAJ 413 bp overlap
ChIP MCF-7 ENCFF009NAJ 321 bp overlap
ZKSCAN5 3 datasets
Motif DE_48h DE_48h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_72h DE_72h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF143 2 datasets
ChIP MCF-7 GSE76454.ZNF143.MCF-7 222 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 152 bp overlap
ZNF175 2 datasets
Motif DE_48h DE_48h-ZNF175_MA2332.1 9 bp overlap
Motif DE_60h DE_60h-ZNF175_MA2332.1 9 bp overlap
ZNF217 1 dataset
ChIP MCF-7 ENCFF379OSU 435 bp overlap
ZNF24 1 dataset
ChIP MCF-7 ENCFF861XIL 345 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 157 bp overlap
ZNF331 1 dataset
ChIP MCF-7 ENCFF969JZR 331 bp overlap
ZNF410 1 dataset
Motif DE_48h DE_48h-ZNF410_MA0752.2 16 bp overlap
ZNF416 1 dataset
Motif DE_48h DE_48h-ZNF416_MA1979.2 10 bp overlap
ZNF449 2 datasets
Motif DE_48h DE_48h-ZNF449_MA1656.2 10 bp overlap
Motif DE_60h DE_60h-ZNF449_MA1656.2 10 bp overlap
ZNF528 2 datasets
Motif DE_48h DE_48h-ZNF528_MA1597.1 17 bp overlap
Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap
ZNF680 3 datasets
Motif DE_48h DE_48h-ZNF680_MA1729.2 11 bp overlap
Motif DE_48h DE_48h-ZNF680_MA1729.2 11 bp overlap
Motif DE_60h DE_60h-ZNF680_MA1729.2 11 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 210 bp overlap
ZNF75A 1 dataset
Motif DE_48h DE_48h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_48h DE_48h-ZNF75D_MA1601.2 12 bp overlap
Zfp809 1 dataset
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap
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